Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00025 ATGGAGTTTGTGAAGAAGTGGAAGAGAGTACTGGGAAGAAGCAAGAGATTGTATCCGGAGAACAGCTTAAGTGGAAGCTATGGCAGATTGAGAAATGAAAGGCAACATAGGAAGAAGGCTTGTGTGGCTCCACAAGGTTGTCTTTGTGTCTACGTTGGACCCGAGAGAGAGAGATTCGTTATCAAGATCGAGATAGCGAACCACCCTTTGTTCAAAGAGCTTCTGGATGGTGCTGAGAGAGAATATGGGTATAGAAACGATGGTCCCTTGTGTCTCCCTTCCATGTTAATTGTTCGTGGAAAGCGCCACTGA 312 0.4583 MEFVKKWKRVLGRSKRLYPENSLSGSYGRLRNERQHRKKACVAPQGCLCVYVGPERERFVIKIEIANHPLFKELLDGAEREYGYRNDGPLCLPSMLIVRGKRH 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00025 103 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 34 93 IPR003676 GO:0009733
Vium3968g00025 103 Pfam Auxin responsive protein 5 93 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00025 Vium-Chr3968 274052 274363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00025 43 93 Calmodulin-binding Proteins AT3G43120 50.980 4.95e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00025 K14488 - gmx:102667331 129.413