Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00024 ATGGAGTTTGTGAAGAAGTGGAAGAGAGTACTGGGAAGAAGCAAGAGATTGTATCCGGAGAACAGCTTAAGTGGAAGCTATGGCAGATTGAGAAATGAAAGGCAACATAGGAAGAAGGCTTGTGTGGCTCCACAAGGTTGTCTTTGTGTCTACGTTGGACCCGAGAGAGAGAGATTCGTTATCAAGATCGAGATAGCGAACCACCCTTTGTTCAAAGAGCTTCTGGATGGTGCTGAGAGAGAATATGGGTATAGAAACGATGGTCCCTTGTGTCTCCCTTGCCATGTTGAATTGTTCTGTGAAGCACTGACGGAGATGGAAATCGGCACCGCGGAAGAAGGTGTTATGGGTTCTCGTAGTTACAGGCACAGTTCATGTTCAGTTTCTGATACCAGATGTAGATATTCGAGAGGGTCTTTCTCTGATTGTTATTATGAAAACCTTGTGAATTGA 453 0.4459 MEFVKKWKRVLGRSKRLYPENSLSGSYGRLRNERQHRKKACVAPQGCLCVYVGPERERFVIKIEIANHPLFKELLDGAEREYGYRNDGPLCLPCHVELFCEALTEMEIGTAEEGVMGSRSYRHSSCSVSDTRCRYSRGSFSDCYYENLVN 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00024 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 35 103 IPR003676 GO:0009733
Vium3968g00024 150 Pfam Auxin responsive protein 5 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00024 Vium-Chr3968 261817 262269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00024 43 99 Calmodulin-binding Proteins AT3G43120 52.632 4.57e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00024 K14488 - gmx:102667331 153.68