Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00017 ATGTCTAAAAACCCGAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGGCGAGTAGTGATGGAGTTGTTTGCCGATACAACCCCAAAAACAGCTGAAAACTTCAGGGCTCTCTGTACTGGGGAAAAGGGGATTGGACAATCTGGGAAACCTTTGCACTATAAGGGGTCAACATTTCATCGTATTATACCAGAATTTATGTGTCAGGGAGGTGATTTTACGAGAGGGAATGGGACAGGAGGAGAGTCAATCTACGGTTCCAAATTTCAAGATGAGAATTTCAAGTTGAAGCACACTGCCCCTGGTATTCTATCTATGGCTAATGCTGGACCCCATACAAACGGTTCTCAGTTCTTCATATGTACTACAAAGACCCCGTGGCTTGATGGAAAGCATGTCGTGTTTGGAAAAGTTGTTGATGGATACAGCGTGGTGAAGGAGATGGAGAAGGTGGGTTCGGGAAGTGGCAAGACATCGGAAACCGTAGTAATAGAAGATTGTGGCCAGATAGAAGAGAAATGA 528 0.4356 MSKNPKVFFDILIGKMKAGRVVMELFADTTPKTAENFRALCTGEKGIGQSGKPLHYKGSTFHRIIPEFMCQGGDFTRGNGTGGESIYGSKFQDENFKLKHTAPGILSMANAGPHTNGSQFFICTTKTPWLDGKHVVFGKVVDGYSVVKEMEKVGSGSGKTSETVVIEDCGQIEEK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00017 175 FunFam Peptidyl-prolyl cis-trans isomerase 1 173 - -
Vium3968g00017 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Vium3968g00017 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Vium3968g00017 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Vium3968g00017 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Vium3968g00017 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Vium3968g00017 175 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 170 IPR002130 GO:0000413|GO:0003755
Vium3968g00017 175 SUPERFAMILY Cyclophilin-like 3 172 IPR029000 -
Vium3968g00017 175 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Vium3968g00017 175 PIRSF Peptidylpro_ismrse 1 175 IPR024936 GO:0003755
Vium3968g00017 175 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 172 - -
Vium3968g00017 175 CDD cyclophilin_ABH_like 5 170 - -
Vium3968g00017 175 Gene3D - 1 175 IPR029000 -
Vium3968g00017 175 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 8 171 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00017 Vium-Chr3968 185202 187129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00017 19 153 U-box Gene Family AT5G67530 49.265 7.47e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00017 K01802 - gmx:100306275 337.035