Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00005 ATGGGTTGCGTCCTTCGAAAGCCGGCGGGTTCTGTCGACAGTCGCAGGGTTAAAACTTCGACCTCCGTCGGCGGGAATAATGCCGTTAAGATTCAGGAGAAGCAGGAGACTGTGCACGCCGGCGAACTTTCCGGCGTTATTCTGGCGCCGGAGCGCCGGAGACGTCGACTTGACTCATTCACGACGAGTCACCAAGGGTGGCCGCCGTGGCTGATGGTCGTCGCCGGCGACGCACTTGGAGACTGGACTCCTCGCCGTGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCAAGAGACCTTGTAACTGGGAAAATAGTGGCTTTGAAGAAGGTTAGATTTGACAATTTGGAGGCAGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAAGGGTTGGTTACTTCAAGAATATCATCCAGTCTTTACTTGGTATTTGAATACATGGAACATGATCTTGCTGGTCTTGCAGCTGGTGTGGGTGTCAAATTCTCTGAGCCACAGATCAAATGTTATATGAAGCAATTGCTATCTGGGCTTGAGCATTGCCATAGCAGAGGAGTTTTGCACCGTGATATCAAGGGTTCCAATCTGCTCATTGACAACGAAGGAATACTTAAAATTGCAGATTTTGGTTTGGCAACTTTCTATGATCCTAAGCAAAAACATCCTATGACCAGTAGAGTTGTGACCCTTTGGTACCGTCCCCCCGAGCTTCTTCTGGGGGCTACATCCTATGGCATTGGTGTCGACCTTTGGAGTGCTGGCTGCATTTTAGCAGAACTTCTTGCTGGAAAGCCAATCATGCCTGGCCGAACAGAGGTTGAGCAGCTGCACAAGATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAGATTGCCAAATGCTACACTCTTTAAGCCGCAGCAACCTTATAAAAGAAACATCTTAGAAACATTCGAGGATTTCCCTTCTTCATTGCCTCTGATTGAAACTCTTCTTGCAATAGATCCTAATGATCGTGGCACTGTCTCATCTGCTCTAAATAGTGAGTTCTTTACCACTGAGCCATATACTTGTGAACCATCTAGTTTGCCAAAGTATCCTCCTACCAAAGAATTGGATATAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAAACTCTAAGTGGAAAAACTAATGCAGTTGATGGTGCCAAAAGGGTTAGAATACGCGAGCGTAGTTTGGCCATTCCGGCCCCAGAAGCCAATGCGGAAATCCAAACGAACATAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGTAAGAGTGAGAAATTCCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCACTTGATGCATCAAACAAAGGAGCTGTTTCATTTGGAGCCACCGAAACATCCACAGCCTCTACCATATTTCATTCAAAATCTTCTGGATCTGTTAAAAGTCACGATCCTGCCAAAGACAAAGTGGGGAGAAGTAATACTGCAGACACCCAGATGACTTCACCTTGGAAATTTTTGCGTTCATTCAAGCTATCAACAATTGGTCATTCATTTGATTCATTACTTAGAAGCAATTAA 1656 0.4529 MGCVLRKPAGSVDSRRVKTSTSVGGNNAVKIQEKQETVHAGELSGVILAPERRRRRLDSFTTSHQGWPPWLMVVAGDALGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGVGVKFSEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKQKHPMTSRVVTLWYRPPELLLGATSYGIGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRNILETFEDFPSSLPLIETLLAIDPNDRGTVSSALNSEFFTTEPYTCEPSSLPKYPPTKELDIKLRDEEARRQKTLSGKTNAVDGAKRVRIRERSLAIPAPEANAEIQTNIDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASNKGAVSFGATETSTASTIFHSKSSGSVKSHDPAKDKVGRSNTADTQMTSPWKFLRSFKLSTIGHSFDSLLRSN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00005 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vium3968g00005 551 FunFam probable serine/threonine-protein kinase At1g54610 77 172 - -
Vium3968g00005 551 MobiDBLite consensus disorder prediction 499 522 - -
Vium3968g00005 551 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Vium3968g00005 551 PANTHER CELL DIVISION PROTEIN KINASE 88 377 - -
Vium3968g00005 551 Pfam Protein kinase domain 90 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3968g00005 551 Gene3D Transferase(Phosphotransferase) domain 1 173 413 - -
Vium3968g00005 551 FunFam probable serine/threonine-protein kinase At1g54610 173 413 - -
Vium3968g00005 551 SMART serkin_6 90 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3968g00005 551 CDD STKc_CDK9_like 90 373 - -
Vium3968g00005 551 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Vium3968g00005 551 SUPERFAMILY Protein kinase-like (PK-like) 84 378 IPR011009 -
Vium3968g00005 551 ProSiteProfiles Protein kinase domain profile. 90 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00005 Vium-Chr3968 57731 62031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00005 82 429 Core Cell Cycle Gene Families AT5G10270 49.041 4.92e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium3968g00005 Pkinase 1.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00005 K08819 - gmx:100789359 974.156