Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00003 ATGGAGGATGGCCGTCAAAATGAAAATGACAGACATAAGATGGACTACTACAGAGGACCACATTCCATGTGGAATACTGGTTCCCAGCATCAAGTGAAAGAGCCAAATGCACTGGTTATGAATAAGAAGATTAGGTCCATTTTGGCTGAAAGGCAGGCTGCTATTCTAGAGCTTGAACTGGAGGCTGCAATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGAAGCCATTCGACAGAGGGATGAAGCACTTGTTCAAAGAGATAATGCTATTTTGGAACGGGATAATGCCCTTGCAGCTCTTCAGAGTCGGAACAGTTCTGTTACCTTCCCTTTTGGCAGTGGAATTCAATGTGGATCAAAACGAATTCATCATTCTTCAAACCATCTGTGTATCATGTCTGAAGCTGCGTACAAAACAAAGGATGCCTCCCCAATTACAGTTATACCTTCTGAAGTTGTCAAATCTCATCAAGCAAAGAGAACAAAGGAGAACAAGGTCATTGGTTCTAAGGCATCAAACCCACCCTACAAAGTAAAGAAAATGGGCGAGGATTTAAACAGGAAGGCTTCTTTTGAAGGTACAAAAATCCGATCTGAATGGCATAGGCAAGATGTTGGCCTGAATTTGGTTAAATTTGATGAAACTACCATGCCAGTTCCAGTTTGCACATGTACTGGCATACCACGACAGTGCTACAAATGGGGGAATGGTGGATGGCAGTCATCTTGTTGTACCACAACATTGTCTATGCATCCATTACCACAACTTCCAAACAAACGCCATGCTCGCATTGGAGGACGAAAGATGAGTGGAAGTGTTTTTACCAGACTTCTCAGCAGGTTGGTGTTAGAAGGCCATGATTTATCAATACCACTAGATCTTAAGGAGTATTGGGCCAGACATGGAACCAATCGCTACATCACCATCAAGTAG 939 0.4302 MEDGRQNENDRHKMDYYRGPHSMWNTGSQHQVKEPNALVMNKKIRSILAERQAAILELELEAAISEKNEALAARDEAIRQRDEALVQRDNAILERDNALAALQSRNSSVTFPFGSGIQCGSKRIHHSSNHLCIMSEAAYKTKDASPITVIPSEVVKSHQAKRTKENKVIGSKASNPPYKVKKMGEDLNRKASFEGTKIRSEWHRQDVGLNLVKFDETTMPVPVCTCTGIPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVLEGHDLSIPLDLKEYWARHGTNRYITIK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00003 312 Pfam GAGA binding protein-like family 13 312 IPR010409 -
Vium3968g00003 312 Coils Coil 53 80 - -
Vium3968g00003 312 MobiDBLite consensus disorder prediction 158 181 - -
Vium3968g00003 312 PANTHER - 21 312 IPR010409 -
Vium3968g00003 312 SMART GAGA_bind_2 1 312 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00003 Vium-Chr3968 32297 36312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00003 1 312 BBR or BPC Transcription factor family AT2G21240 59.873 6.09e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vium3968g00003 GAGA_bind 1.2e-94 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00003 - - gmx:100813103 540.036