Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00001 ATGGCAGCTTTTTCATCCCAATCCTACCATCCCTTTCTACTTCACTCCACAAACACCCAACAACCCCTTATAAACACTCCTACCACCCATTCTTTTCACAAGGAAAAAACGTCTCTTAATACTCTCACTAATCAAGAATCTACCAGCAGTGACATTGAGCCTTCTGTCATAAAAAACCACAGTCCTCAGACATCCATGGTTGAAGATAAACTTGAAATAGGTGAACAAGTTACTCAAAACCTCACCTCTATGCAGAAGAAGAGAACACAAAAAAATGGACCTTCCTTAACCAGCCCCTTATCGATGGATTCGGCAGAAGGGGCAAGCAAGAAACAGAAGAAAAGCAATGGTGGTGATCAAGGAGAAAACAAGCCAAAAGAAGTGAAGAAGGATCAAAAGAAGGGTCCAGAAGATCCTCCAACGGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACGGATAGCCACAGCCTTGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTGGCAATGGACTTAGACACGCTCACGGTTAGGCCTGATCAGAAGTTAAATAATGCAGCATCCCCATCACTACTACCATGTGTGGAACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACGACCACCCTGACCACCACTACCAGCAGCTTCCCCACCGCTAATAATGATGACTTTCTTTTGGATTATTCATCTTCATCTTTTCTTCAACCCCACAGGCCAAATGTCTTCTTCGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAGCGACAAAAGTTTCTTCAACCATATGGATTCGCCAATAATACTGGCTCTTTCAATTAA 996 0.4367 MAAFSSQSYHPFLLHSTNTQQPLINTPTTHSFHKEKTSLNTLTNQESTSSDIEPSVIKNHSPQTSMVEDKLEIGEQVTQNLTSMQKKRTQKNGPSLTSPLSMDSAEGASKKQKKSNGGDQGENKPKEVKKDQKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLTVRPDQKLNNAASPSLLPCVEQCRPNQAIAFADTTTLTTTTSSFPTANNDDFLLDYSSSSFLQPHRPNVFFEYNGGQIWEVDQRQKFLQPYGFANNTGSFN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00001 331 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 249 IPR024097 GO:0006355
Vium3968g00001 331 SMART finulus 158 208 IPR011598 GO:0046983
Vium3968g00001 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 219 IPR036638 GO:0046983
Vium3968g00001 331 CDD bHLH_AtBPE_like 142 218 - -
Vium3968g00001 331 Gene3D - 149 220 IPR036638 GO:0046983
Vium3968g00001 331 MobiDBLite consensus disorder prediction 82 160 - -
Vium3968g00001 331 MobiDBLite consensus disorder prediction 107 160 - -
Vium3968g00001 331 MobiDBLite consensus disorder prediction 82 105 - -
Vium3968g00001 331 MobiDBLite consensus disorder prediction 38 66 - -
Vium3968g00001 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 202 IPR011598 GO:0046983
Vium3968g00001 331 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
Vium3968g00001 331 FunFam Basic helix-loop-helix transcription factor 149 221 - -
Vium3968g00001 331 MobiDBLite consensus disorder prediction 38 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00001 Vium-Chr3968 8003 10756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00001 62 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 54.396 2.39e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3968g00001 HLH 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00001 - - vun:114179333 522.702