Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3965g00004 ATGGTTTCTACTTGGGTAAGAGGCAAGTGCATAGGCAAGGGCGCGTTTGGTACCGTCAGCGTCGCGCTTCGAAAGCTTGACGCCCAAACGCAAATTTTCGCGGTGAAGTCTGTGGATATTAAAACGGGTCTCCCGGGTCAGCTCGAAGCGTTGGAGAACGAAATTCGGATCCTCCGACGCATGTCCTCGCCGCACGTGGTAACCTTTCTCGGCGAAGACACCACATGCGAGAAGCGGAACCTTCACATGGAGTACATGCCATGTGGCACTCTCGCTGACCTGGACCCCGACGTGGACGAGTATTTAGTGAGACAATACACGTGGTGCTTGGTGAGCGCTCTGAAGCACGTGCACGGAAACGGCGTCGTGCACTGCGACGTGAAGGGGAAGAACGTCCTTGTTGGAGACGGAGCCAACGGTCGCAACTGCAAGCTCGCCGACTTCGGCTCGGCGATGGAGTTCGACGGGGAAGGTCTCCCGGCGGCATCGCCGCGCGGGAGTCCGCTGTGGATGGCGCCGGAAGTGATACGCCGGGAGTGTCAGGGTCCGGCGTCGGACGTTTGGTCGTTAGGTTGCACGATGATCGAGATGCTCACCGGAAAACCGCCGTGGGAGGGGAACGCCATGGACGCGCTGAGTCGGATTGGATTCTCCGGCGACGTGCCGGGGTTTCCGCGCCGGTTATCGGAGCTCGGCCGGGATTTTCTGGAGAAGTGTTTGAGGAGGGAGCCGTGGCGGCGGTGGAGCTGCGATCAACTGCTGGAGCATCCGTTTCTGTTACCGTGTGGTGTGATCGTGGAATCGTCGCCTCGGTGTGTTCTCGACCGAGTTGACTCGGAGTTCGCTGAGTTCGACGAGGAAGAAGAACAGGAAGAAGAAGAAATAATAACTGAAAGTGAAAATTCGGCAAGGGATAGAATTGGAAAATTGGCTACGAGCGTAGGGGTAAATTGGGAAGCGCCAGGATGGGTGATGGTGAGGGAATTGGCTTTCGATGCCGAACCGGTGGTGGCTGACAGTTCTGAGAATGTTAGAGAAGGGTCGATTTTGGAAAATTTTGAGAATTCGAGGGAAGAACGGGGAATTCAGGAAAGGACAAATTCGGAATGTGAAAGCTTGAAAAACGAAATGGTAAAATTGGGAATGTGGTGTTTGGGTGGGAGGCGGTGGTTGTTACAGTACAACCGGCGCAGTGAGTGTGAGTGTGGGTGGGAAAATGTTGATAAGAAAAAAAGAATGATACTGAAAATAAACATTTACAAGTTGTACTTTAAATTATTGAAATCACATTGTTTCTATTTGAAGTATTTAAACATATATTATTTATGTTTTGGGGTTATTTGGGTGGATTCGTATTGA 1359 0.5224 MVSTWVRGKCIGKGAFGTVSVALRKLDAQTQIFAVKSVDIKTGLPGQLEALENEIRILRRMSSPHVVTFLGEDTTCEKRNLHMEYMPCGTLADLDPDVDEYLVRQYTWCLVSALKHVHGNGVVHCDVKGKNVLVGDGANGRNCKLADFGSAMEFDGEGLPAASPRGSPLWMAPEVIRRECQGPASDVWSLGCTMIEMLTGKPPWEGNAMDALSRIGFSGDVPGFPRRLSELGRDFLEKCLRREPWRRWSCDQLLEHPFLLPCGVIVESSPRCVLDRVDSEFAEFDEEEEQEEEEIITESENSARDRIGKLATSVGVNWEAPGWVMVRELAFDAEPVVADSSENVREGSILENFENSREERGIQERTNSECESLKNEMVKLGMWCLGGRRWLLQYNRRSECECGWENVDKKKRMILKINIYKLYFKLLKSHCFYLKYLNIYYLCFGVIWVDSY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3965g00004 452 SUPERFAMILY Protein kinase-like (PK-like) 3 267 IPR011009 -
Vium3965g00004 452 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
Vium3965g00004 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Vium3965g00004 452 Coils Coil 274 294 - -
Vium3965g00004 452 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3965g00004 452 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3965g00004 452 CDD STKc_MAPKKK 5 259 - -
Vium3965g00004 452 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Vium3965g00004 452 FunFam Serine threonine protein kinase putative 3 311 - -
Vium3965g00004 452 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 319 - -
Vium3965g00004 452 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3965g00004 Vium-Chr3965 47845 49216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3965g00004 5 334 MAP Kinase Kinase Kinase AT2G30040 59.172 9.43e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium3965g00004 Pkinase 4.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3965g00004 - - gsj:114373085 677.552