Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3965g00001 ATGCCAACCCAAGCTGACTCGCCCAACACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTTCTCCTTGTCATCCTCTTTGTCCTCCTTCTACACCTCTATGCCAGATGGTTCCTTGCTCAGGCACAGGCTCAGGCACACGCCCGCCGTCGACGCCGCCGCCGCCGAACCACGGTGACCGTCTCCGACGTCCTTGGCCCTGCTAGGTTCCACCAGTTCCACAGCTTCAACATAGAAGACTCCTCACCCCTCTCAACCAAAGGCCTGGATTCTTCCACCATTAGAGCAATTCCTCTCTTCATCTATGAGCATAACAACAAGGCAAAAGAAGATGAAGAACTTGAATGTGTGATTTGTTTGAGTGCCTTTGAGGGTGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTAAGTTCACACTCCAATTGTCCTATTTGTAGAGCCCCCATTGTAGTAAATGTTGTTGAGAGCGATTCTTCTCAGGTTGTCTCTTCAAGAGATCATGGTGCTGAATATGGTGGTTCTGATTTTGAGATTGTGGTTGATGCTGGTTCCGATGAGACCAGAGAGAGTGATCACGGGAATGGTAATGGTAATGGAGGAGCAAGAACAAGTGTTTCTGTGTCAGAAACCTCTTCCTCGTTTTTGGGGTGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCTTCGGCTAATTAA 768 0.4831 MPTQADSPNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYARWFLAQAQAQAHARRRRRRRRTTVTVSDVLGPARFHQFHSFNIEDSSPLSTKGLDSSTIRAIPLFIYEHNNKAKEDEELECVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVVNVVESDSSQVVSSRDHGAEYGGSDFEIVVDAGSDETRESDHGNGNGNGGARTSVSVSETSSSFLGCSLERMLGKVFPSAN 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3965g00001 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 175 IPR013083 -
Vium3965g00001 255 FunFam RING-H2 finger protein ATL1 87 175 - -
Vium3965g00001 255 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vium3965g00001 255 Pfam Ring finger domain 127 170 IPR001841 -
Vium3965g00001 255 CDD RING-H2_EL5-like 127 170 - -
Vium3965g00001 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 183 - -
Vium3965g00001 255 SUPERFAMILY RING/U-box 117 176 - -
Vium3965g00001 255 SMART ring_2 128 169 IPR001841 -
Vium3965g00001 255 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3965g00001 Vium-Chr3965 7556 8579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3965g00001 17 222 Rapid Response to Elicitors AT3G16720 32.524 1.22e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3965g00001 - - pvu:PHAVU_006G070000g 407.142