Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3960g00003 ATGGGCTGTGTTCAGGCCAAGCAATTGGATTCGGAAGGTCCAGACTACCGGGGCCTAGAGAGGTTGAAGTTGGATAATGGGTATGTCGCAAGCTCTGACTTTGTTGCTCACAGGAGATCCACTGGTCAAAGACATGACCCCAATAAGGACCACCATCACAGGCTGCATCAGCATCAGAGAGAACAGCCCATAAAGAATAAAGTTGAGTCCGGTGTTGCCAAGGATGGTTCTGGGCATCATAAGGGCAAGGTGGTTGGAAGGGAGGGGAGGCGATTCACGCGTCTTGATGATAAGAAAGTGACAAACAAGTGTTGCTTTGAGGATGAGATGGTAGATGGGTGGCCAAGGTGGTTGGTTGATAATGTCCCTGCACAAGTGTTGGCTGGCTTGGTTCCCAGGAGTGCTGAATCCTACAAAATGATTGATAAGGTTGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTGGATAGAGACACAGGAGAAATTGTGGCCCTGAAGAAGGTTCGCTTCAATACATCAGAGCCCGAAAGCATAAAGTTTATGGCAAGAGAAATTACCATATTACAGAGACTGGATCATCCCAATGTAGTCAAACTTAAAGGATTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGAGTTCATGCAAACAGATTTGGCACGAGTCATTGCTCGTCCTGAAGAGAAACTATCAGAACCACAGGTCAAGTGCTATATGCATCAATTACTATCAGGTCTGCAGCATTGCCATGATAGGGGAATTCTTCACCGAGATATAAAGGGGTCAAACCTTTTGATTGATAAAAATGGGATGCTTCAGATTGCAGATTTTGGACTTGCCAATTTTTATGGTCCAGATTATCATCAGCCTCTCACTAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAATTGTTGTTAGGTGACACAAACTATGGAGTTGGTGTTGATCTGTGGAGTGCTGGATGTCTCCTGGCAGAAATGTTCAAAGGATTCCCAATCATGCCTGGCAGAAATGAGGTTGAGCAAATTCATAAAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTACTACTTTTAGACCTCCAAAGTCTTATAGACCCAGCCTTATAGAAACTTTCGGTGATCTCCCTTCTTCTTCTTTAGGTCTTTTATGCACCCTGCTTGCTCTGGATCCTGCATTCCGTGGAAGTGCATCCAAAGCTCTTAAAAATCAGTTTTTCTTTACAAGCCCATTGGCGTGTGACCTCTCTGGTCTGCCTGTTCTCTTCAAAGAGGATGATGAGCATGTTCAAGCCAACGAACAGATCAAGTACATGAACTCTAAAATCAGACGTTCTCGTACATATCTGGAGCGTCGTAAGAATTCAGCATCTAAGAGGCCAACAGAGCATACTGTATCTTCTAAAGAGGTATTAATGAAAATTTGA 1467 0.4369 MGCVQAKQLDSEGPDYRGLERLKLDNGYVASSDFVAHRRSTGQRHDPNKDHHHRLHQHQREQPIKNKVESGVAKDGSGHHKGKVVGREGRRFTRLDDKKVTNKCCFEDEMVDGWPRWLVDNVPAQVLAGLVPRSAESYKMIDKVGQGTYSNVYKALDRDTGEIVALKKVRFNTSEPESIKFMAREITILQRLDHPNVVKLKGLATSRMQYSIYLVFEFMQTDLARVIARPEEKLSEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANFYGPDYHQPLTSRVVTLWYRAPELLLGDTNYGVGVDLWSAGCLLAEMFKGFPIMPGRNEVEQIHKIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLIETFGDLPSSSLGLLCTLLALDPAFRGSASKALKNQFFFTSPLACDLSGLPVLFKEDDEHVQANEQIKYMNSKIRRSRTYLERRKNSASKRPTEHTVSSKEVLMKI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3960g00003 488 PANTHER CELL DIVISION PROTEIN KINASE 136 425 - -
Vium3960g00003 488 Pfam Protein kinase domain 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3960g00003 488 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Vium3960g00003 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vium3960g00003 488 MobiDBLite consensus disorder prediction 38 89 - -
Vium3960g00003 488 MobiDBLite consensus disorder prediction 61 89 - -
Vium3960g00003 488 FunFam Putative serine/threonine-protein kinase 221 458 - -
Vium3960g00003 488 ProSiteProfiles Protein kinase domain profile. 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3960g00003 488 SUPERFAMILY Protein kinase-like (PK-like) 133 424 IPR011009 -
Vium3960g00003 488 FunFam probable serine/threonine-protein kinase At1g54610 125 220 - -
Vium3960g00003 488 Gene3D Transferase(Phosphotransferase) domain 1 221 450 - -
Vium3960g00003 488 Gene3D Phosphorylase Kinase; domain 1 128 220 - -
Vium3960g00003 488 SMART serkin_6 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3960g00003 Vium-Chr3960 20030 23876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3960g00003 133 434 Core Cell Cycle Gene Families AT5G10270 46.562 2.22e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium3960g00003 Pkinase 7.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3960g00003 K08819 - gmx:100776854 840.876