LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3960g00002	ATGGGCTGTGTTCAGGCCAAGCAATTGGATTCGGAAGGTCCAGACTACCGGGGCCTAGAGAGGTTGAAGTTGGATAATGGGTATGTCGCAAGCTCTGACTTTGTTGCTCATAGGAGATCCACTGGTCAAAGACATGACCCCAATAAGGACCACCATCACAGGCTGCATCAGCATCAGAGAGAACAGCCCATAAAGAATAAAGTTGAGTCCGGTGTTGCCAAGGATGGTCCTGGGCATCATAAGGGCAAGGTGGTTGGAAGGGAGGGGAGGCGATTCACGCGTCTTGATGATAAGAAAGTGACAAACAAGTGTTGCTTTGAGGATGAGATGGTAGATGGGTGGCCAAGGTGGTTGGTTGATAATGTCCCTGCACAAGTGTTGGCTGGCTTGGTTCCCAGGAGTGCTGAATCCTACAAAATGATTGATAAGGTTGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTGGATAGAGACACAGGAGAAATTGTGGCCCTGAAGAAGGTTCGCTTCAATACATCAGAGCCCGAAAGCATAAAGTTTATGGCAAGAGAAATTACCATATTACAGAGACTGGATCATCCCAATGTAGTCAAACTTAAAGGATTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGAGTTCATGCAAACAGATTTGGCACGAGTCATTGCTCGTCCTGAAGAGAAACTATCAGAACCACAGGTCAAGTGCTATATGCATCAATTACTATCAGGTCTGCAGCATTGCCATGATAGGGGAATTCTTCACCGAGATATAAAGGGGTCAAACCTTTTGATTGATAAAAATGGGATGCTTCAGATTGCAGATTTTGGACTTGCCAATTTTTATGGTCCAGATTATCATCAGCCTCTCACTAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAATTGTTGTTAGGTGACACAAACTATGGAGTTGGTGTTGATCTGTGGAGTGCTGGATGTCTCCTGGCAGAAATGTTCAAAGGATTCCCAATCATGCCTGGCAGAAATGAGGTTGAGCAAATTCATAAAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTACTACTTTTAGACCTCCAAAGTCTTATAGACCCAGCCTTATAGAAACTTTCGGTGATCTCCCTTCTTCTTCTTTAGGTCTTTTATGCACCCTGCTTGCTCTGGATCCTGCATTCCGTGGAAGTGCATCCAAAGCTCTTAAAAATCAGTTTTTCTTTACAAGCCCATTGGCGTGTGACCTCTCTGGTCTGCCTGTTCTCTTCAAAGAGGATGATGAGCATGTTCAAGCCAACGAACAGATCAAGTACATGAACTCTAAAATCAGACGTTCTCGTACATATCTGGAGCGTCGTAAGAATTCAGCATCTAAGAGGCCAACAGAGCATACTGTATCTTCTAAAGAGGAATTGATAAGGAATGCTAAACCTGAAACTTATGCTCCAACTGTAGACATGGGTAGCACAAGTAGTACCTCATCTAGTGTAAACCCAGGAGGGGCTAAGGACCAATCACCTTTTTTTCTATCTCCATTTGGGGAATTAGATCGAAAGCTATCTCCAAAAACCCACCACCACCATGTTAATGTTGGTGAAGAAAACATCAAAATTCTTCCTCCATTACCCAAGTCTAAACCAAATGCTACGAAGAAAGATGACAGTAGATACAGACCAGACCAGTTTTTCAGGTCAGCTTCCACCAGAGAATTTAGATACTTGAAAAGGGAAAACGTTTAA	1779	0.4328	MGCVQAKQLDSEGPDYRGLERLKLDNGYVASSDFVAHRRSTGQRHDPNKDHHHRLHQHQREQPIKNKVESGVAKDGPGHHKGKVVGREGRRFTRLDDKKVTNKCCFEDEMVDGWPRWLVDNVPAQVLAGLVPRSAESYKMIDKVGQGTYSNVYKALDRDTGEIVALKKVRFNTSEPESIKFMAREITILQRLDHPNVVKLKGLATSRMQYSIYLVFEFMQTDLARVIARPEEKLSEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANFYGPDYHQPLTSRVVTLWYRAPELLLGDTNYGVGVDLWSAGCLLAEMFKGFPIMPGRNEVEQIHKIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLIETFGDLPSSSLGLLCTLLALDPAFRGSASKALKNQFFFTSPLACDLSGLPVLFKEDDEHVQANEQIKYMNSKIRRSRTYLERRKNSASKRPTEHTVSSKEELIRNAKPETYAPTVDMGSTSSTSSSVNPGGAKDQSPFFLSPFGELDRKLSPKTHHHHVNVGEENIKILPPLPKSKPNATKKDDSRYRPDQFFRSASTREFRYLKRENV	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3960g00002	592	MobiDBLite	consensus disorder prediction	547	575	-	-
	Vium3960g00002	592	FunFam	Putative serine/threonine-protein kinase	221	458	-	-
	Vium3960g00002	592	ProSitePatterns	Protein kinases ATP-binding region signature.	144	167	IPR017441	GO:0005524
	Vium3960g00002	592	Gene3D	Phosphorylase Kinase; domain 1	128	220	-	-
	Vium3960g00002	592	Pfam	Protein kinase domain	138	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3960g00002	592	MobiDBLite	consensus disorder prediction	560	575	-	-
	Vium3960g00002	592	MobiDBLite	consensus disorder prediction	462	521	-	-
	Vium3960g00002	592	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	258	270	IPR008271	GO:0004672\|GO:0006468
	Vium3960g00002	592	MobiDBLite	consensus disorder prediction	38	89	-	-
	Vium3960g00002	592	MobiDBLite	consensus disorder prediction	61	89	-	-
	Vium3960g00002	592	ProSiteProfiles	Protein kinase domain profile.	138	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3960g00002	592	MobiDBLite	consensus disorder prediction	462	489	-	-
	Vium3960g00002	592	PANTHER	CELL DIVISION PROTEIN KINASE	136	425	-	-
	Vium3960g00002	592	SUPERFAMILY	Protein kinase-like (PK-like)	133	424	IPR011009	-
	Vium3960g00002	592	MobiDBLite	consensus disorder prediction	497	515	-	-
	Vium3960g00002	592	SMART	serkin_6	138	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium3960g00002	592	Gene3D	Transferase(Phosphotransferase) domain 1	221	488	-	-
	Vium3960g00002	592	FunFam	probable serine/threonine-protein kinase At1g54610	125	220	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3960g00002	Vium-Chr3960	14813	19490	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3960g00002	133	434	Core Cell Cycle Gene Families	AT5G10270	46.562	9.30e-92	290

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vium3960g00002		Pkinase	1.2e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3960g00002	K08819		-	gmx:100776854	1003.05