Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3960g00001 ATGGCTTCTATTTCTTCTAATAAGAATGCTATTTTCAGCTTTCTTCTCCTCTCTATCATTCTTTCTGTTTCAGTTATTAAAGTGTGTGAGGCACAAGCCAGGCCTCCTACTGTCAGAGGTCTATCATATACCTTCTATTCCAAAACTTGCCCTACGCTTAAATCCATAGTTAGAACTGAGCTCAAAAAGGTCTTCAAGAGCGACATTGCTCAAGCTGCTGGCTTGCTTCGCCTTCACTTCCATGACTGCTTTGTTCAGGGATGTGATGGGTCAGTTTTATTGGATGGATCTGCAAGTGGGCCGAGTGAGAAAGATGCGCCACCAAACTTGACTTTGAGAGCTGAAGCTTTTAGGATCATCGAAAGGATTCGTGGTCTGTTAGAGAAGAGCTGTGGAAGAGTCGTCTCATGTTCAGACATCACTGCCCTCGCTGCACGTGATGCTGTTTTCCTTTCAGGGGGACCAGACTATGAGATTCCCTTGGGAAGGAGAGATGGGTTAACCTTTGCCTCTAGACAGGTGACATTGGACAACCTTCCACCACCCTCAAGCAACACCACCACCATCCTAAACTCCCTCGCCACCAAAAACCTCGACCCCACCGATGTGGTATCCCTCTCTGGTGGCCACACCATAGGCATAAGTCACTGCAGCTCTTTCAACAACAGACTCTACCCTACACAGGACCCTGTCATGGACAAAACCTTTGGCAAAAACCTCAGACTCACTTGCCCCACCAACACCACCGACAACACACAGTTGGACATTCGATCCCCCAATACCTTCGACAACAAGTACTACGTTGACCTCATGAACCGACAGGGCCTCTTCACCTCCGACCAAGACCTCTACAGTAAGAGGACCAAGAGCATTGTCACCAGCTTTGCCGTGAACCAGAGTCTCTTCTTTGAGAAGTTTGTGTTCGCCATGCTCAAGATGGGTCAGCTCAGTGTGCTCACGGGAAATCAAGGGGAGATTCGTGCCAACTGCTCCGTGAGGAATGCCAACAGCAAGGCCTTCTTGAGTTCCGTCGTGGAAAATGTGGCCCAAGAATTCATAGAAATGTAA 1068 0.4831 MASISSNKNAIFSFLLLSIILSVSVIKVCEAQARPPTVRGLSYTFYSKTCPTLKSIVRTELKKVFKSDIAQAAGLLRLHFHDCFVQGCDGSVLLDGSASGPSEKDAPPNLTLRAEAFRIIERIRGLLEKSCGRVVSCSDITALAARDAVFLSGGPDYEIPLGRRDGLTFASRQVTLDNLPPPSSNTTTILNSLATKNLDPTDVVSLSGGHTIGISHCSSFNNRLYPTQDPVMDKTFGKNLRLTCPTNTTDNTQSXDIRSPNTFDNKYYVDLMNRQGLFTSDQDLYTXKRTKSIVTSFAVNQSLFFEKFVFAMLKMGQLSVLTGNQGEIRANCSVRNANSKAFLSSVVENVAQEFIEM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3960g00001 357 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601
Vium3960g00001 357 ProSitePatterns Peroxidases proximal heme-ligand signature. 202 212 IPR019793 -
Vium3960g00001 357 PRINTS Haem peroxidase superfamily signature 256 271 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Haem peroxidase superfamily signature 135 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Haem peroxidase superfamily signature 72 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Haem peroxidase superfamily signature 153 165 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Haem peroxidase superfamily signature 202 217 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 SUPERFAMILY Heme-dependent peroxidases 36 336 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 Gene3D - 44 333 - -
Vium3960g00001 357 Pfam Peroxidase 57 299 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PANTHER PEROXIDASE 25-RELATED 21 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 FunFam Peroxidase 44 192 - -
Vium3960g00001 357 PRINTS Plant peroxidase signature 201 213 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Plant peroxidase signature 270 287 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Plant peroxidase signature 50 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Plant peroxidase signature 254 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Plant peroxidase signature 153 168 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Plant peroxidase signature 74 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Plant peroxidase signature 115 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Plant peroxidase signature 134 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 PRINTS Plant peroxidase signature 310 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3960g00001 357 CDD secretory_peroxidase 40 334 IPR033905 GO:0004601|GO:0042744
Vium3960g00001 357 Gene3D Peroxidase, domain 2 181 316 - -
Vium3960g00001 357 FunFam Peroxidase 180 315 - -
Vium3960g00001 357 ProSiteProfiles Plant heme peroxidase family profile. 40 336 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3960g00001 Vium-Chr3960 5816 8543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3960g00001 11 357 Peroxidase AT1G71695 59.659 2.48e-158 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3960g00001 K00430 - gmx:100775837 585.489