Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3959g00004 ATGCTCCATATGTCTTGGTTACAGAAATTTCAGAAGTGTGAATATGCTAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATCTTAAGGCAGGACAATTTGTCATCGAATACTGTGGAGAAGTTATATCATGGAAGGAAGCCAAACGTAGATCTCAGGCTTATGAAGATCAAGGCCTTAAAGACGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCACTCAAATGTTCAGGGTTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCAGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTAGATGTGATGCTTAAAGCTGAGCAACTATCTGAGTCCACTGGTTTCAATGTTCAGTCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTCAAAAAGATTAAGACTGAAGTAGCAGATGAGGATATGCACTTGTACACCCACGATACTGAACAGACGCTTTCACAAAAGAATGCAATGATATCACGAATCCGAGGTAATGCTGCAGGCAGAAACTATCACATTGGACCTAGGTCCATTTCTACCAAAAGATCAAGGGCATATAATGGCGGAAGGTTTAAAAATCTCGTAGAGAAGAGAATTGATGCCAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTCTGAGAAAAGAAAGGATGATGCTACATCTACTCTTGATTCCTTATACGATGAAATACGGCCTGCTATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACCACTGTCGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCTGAGTTTGATCTCTACTCGTCAATTGTGAAAAATGTTGCTTGCACTGCGCAAAGGGCACCTGGACAAGCAAAACCTACTGAAGTAGATAATGAAAACGAAATTAAGTTCTTGACAGGTTGA 1245 0.4024 MLHMSWLQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYEDQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESTGFNVQSLDSVQMKDLDVKKIKTEVADEDMHLYTHDTEQTLSQKNAMISRIRGNAAGRNYHIGPRSISTKRSRAYNGGRFKNLVEKRIDAKFAAGLLASKEAQEEILNSEKRKDDATSTLDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPGQAKPTEVDNENEIKFLTG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3959g00004 414 Coils Coil 314 334 - -
Vium3959g00004 414 Pfam SET domain 27 133 IPR001214 GO:0005515
Vium3959g00004 414 Gene3D SET domain 5 168 IPR046341 -
Vium3959g00004 414 PANTHER SET DOMAIN PROTEINS 8 397 - -
Vium3959g00004 414 SMART set_7 16 139 IPR001214 GO:0005515
Vium3959g00004 414 SUPERFAMILY SET domain 8 153 IPR046341 -
Vium3959g00004 414 ProSiteProfiles Post-SET domain profile. 140 156 IPR003616 -
Vium3959g00004 414 ProSiteProfiles SET domain profile. 16 133 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3959g00004 Vium-Chr3959 1425 6702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3959g00004 16 155 C2H2 Transcription Factor Family AT2G23740 34.375 8.72e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium3959g00004 SET 5.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3959g00004 - - gmx:100775294 747.273