Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3959g00003 ATGCAAAATCTGATGAATATTTTGTATTGGAATTCTGGATTAAGCATCAAAAGTTTTATTGAGTTGTTTACCTTTCACTTCATATTTCTTTCCAGGCACAAAAAACAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACACTGACAGTGCATGCGGGGATAGCTGCTTGAATGTTTTAACCAGCACAGAATGCACCCTTGGTTATTGCCCTTGTGATATCTTGTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCTAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATCTTAAGGCAGGACAATTTGTCATCGAATACTGTGGAGAAGTTATATCATGGAAGGAAGCCAAACGTAGATCTCAGGCTTATGAAGATCAAGGCCTTAAAGACGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCACTCAAATGTTCAGGGTTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCAGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTAGATGTGATGCTTAAAGCTGAGCAACTATCTGAGTCCACTGGTTTCAATGTTCAGTCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTCAAAAAGATTAAGACTGAAGTAGCAGATGAGGATATGCACTTGTACACCCACGATACTGAACAGACGCTTTCACAAAAGAATGCAATGATATCACGAATCCGAGGTAATGCTGCAGGCAGAAACTATCACATTGGACCTAGGTCCATTTCTACCAAAAGATCAAGGGCATATAATGGCGGAAGGTTTAAAAATCTCGTAGAGAAGAGAATTGATGCCAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTCTGAGAAAAGAAAGGATGATGCTACATCTACTCTTGATTCCTTATACGATGAAATACGGCCTGCTATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACCACTGTCGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCTGAGTTTGATCTCTACTCGTCAATTGTGAAAAATGTTGCTTGCACTGCGCAAAGGGCACCTGGACAAGCAAAACCTACTGAAGTAGATAATGAAAACGAAATTAAGTTCTTGACAGGTTGA 1473 0.3965 MQNLMNILYWNSGLSIKSFIELFTFHFIFLSRHKKQKEEDIAICECKYDADDTDSACGDSCLNVLTSTECTLGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYEDQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESTGFNVQSLDSVQMKDLDVKKIKTEVADEDMHLYTHDTEQTLSQKNAMISRIRGNAAGRNYHIGPRSISTKRSRAYNGGRFKNLVEKRIDAKFAAGLLASKEAQEEILNSEKRKDDATSTLDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPGQAKPTEVDNENEIKFLTG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3959g00003 490 SUPERFAMILY SET domain 32 229 IPR046341 -
Vium3959g00003 490 ProSiteProfiles AWS domain profile. 39 90 IPR006560 GO:0005634|GO:0042054
Vium3959g00003 490 SMART shorttest3 39 91 IPR006560 GO:0005634|GO:0042054
Vium3959g00003 490 Pfam AWS domain 51 89 IPR006560 GO:0005634|GO:0042054
Vium3959g00003 490 Coils Coil 390 410 - -
Vium3959g00003 490 SMART set_7 92 215 IPR001214 GO:0005515
Vium3959g00003 490 FunFam Histone-lysine N-methyltransferase 10 244 - -
Vium3959g00003 490 Pfam SET domain 103 209 IPR001214 GO:0005515
Vium3959g00003 490 Gene3D SET domain 24 244 IPR046341 -
Vium3959g00003 490 PANTHER SET DOMAIN PROTEINS 28 473 - -
Vium3959g00003 490 ProSiteProfiles Post-SET domain profile. 216 232 IPR003616 -
Vium3959g00003 490 ProSiteProfiles SET domain profile. 92 209 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3959g00003 Vium-Chr3959 854 6702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3959g00003 74 231 C2H2 Transcription Factor Family AT2G23740 33.708 1.63e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium3959g00003 SET 7.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3959g00003 - - gmx:100775294 853.203