Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3959g00001 ATGCAAAATCTGATGAATATTTTGTATTGGAATTCTGGATTAAGCATCAAAAGTTTTATTGAGTTGTTTACCTTTCACTTCATATTTCTTTCCAGGCACAAAAAACAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACACTGACAGTGCATGCGGGGATAGCTGCTTGAATGTTTTAACCAGCACAGAATGCACCCTTGGTTATTGCCCTTGTGATATCTTGTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCTAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATCTTAAGGCAGGACAATTTGTCATCGAATACTGTGGAGAAGTTATATCATGGAAGGAAGCCAAACGTAGATCTCAGGCTTATGAAGATCAAGGCCTTAAAGACGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCACTCAAATGTTCAGGGTTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCAGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTAGATGTGATGCTTAAAGCTGAGCAACTATCTGAGTCCACTGGTTTCAATGTTCAGTCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTCAAAAAGATTAAGACTGAAGTAGCAGATGAGGATATGCACTTGTACACCCACGATACTGAACAGACGCTTTCACAAAAGAATGCAATGATATCACGAATCCGAGGTAATGCTGCAGGCAGAAACTATCACATTGGACCTAGGTCCATTTCTACCAAAAGATCAAGGGCATATAATGGCGGAAGGTTTAAAAATCTCGTAGAGAAGAGAATTGATGCCAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTCTGAGGTACGTCCTCTTGCAAAGATAGCTTTAGTAATGTAG 1239 0.3898 MQNLMNILYWNSGLSIKSFIELFTFHFIFLSRHKKQKEEDIAICECKYDADDTDSACGDSCLNVLTSTECTLGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYEDQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESTGFNVQSLDSVQMKDLDVKKIKTEVADEDMHLYTHDTEQTLSQKNAMISRIRGNAAGRNYHIGPRSISTKRSRAYNGGRFKNLVEKRIDAKFAAGLLASKEAQEEILNSEVRPLAKIALVM 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3959g00001 412 ProSiteProfiles AWS domain profile. 39 90 IPR006560 GO:0005634|GO:0042054
Vium3959g00001 412 Pfam AWS domain 51 89 IPR006560 GO:0005634|GO:0042054
Vium3959g00001 412 SMART shorttest3 39 91 IPR006560 GO:0005634|GO:0042054
Vium3959g00001 412 Gene3D SET domain 24 244 IPR046341 -
Vium3959g00001 412 FunFam Histone-lysine N-methyltransferase 10 244 - -
Vium3959g00001 412 SMART set_7 92 215 IPR001214 GO:0005515
Vium3959g00001 412 PANTHER SET DOMAIN PROTEINS 28 340 - -
Vium3959g00001 412 SUPERFAMILY SET domain 31 229 IPR046341 -
Vium3959g00001 412 ProSiteProfiles Post-SET domain profile. 216 232 IPR003616 -
Vium3959g00001 412 Pfam SET domain 103 209 IPR001214 GO:0005515
Vium3959g00001 412 ProSiteProfiles SET domain profile. 92 209 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3959g00001 Vium-Chr3959 842 6260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3959g00001 74 231 C2H2 Transcription Factor Family AT2G23740 33.708 7.83e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium3959g00001 SET 5.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3959g00001 - - gmx:100804657 686.797