Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium394g00017 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAAAAGCTGTTCAACTACATAACCAGATTTGGAGTTGGATGCTGGAGTTCGGTTCCCAAACTAGCTGGACTTCAGAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGGATGTTCTCACAGCAGGAGGAGGATCTTATAATCAGTCTCCACGAAGTTCTTGGAAACAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAAAACTTCTGGAATTCGTGTCTAAAGAAGAAGCTTCTGAAGCAAGGGATTGACCCAAATACACACAAGCCTTTAACAGAAGGTCATGTTAAGGAAGAAAAGAAAATCACAGAGACAGCACCTATGCAAACACCACTGTCTCAAGGCCTTTCAGTTCCATTAACTTTCCCTTCATCACAGGGAACAACACTTTTAATAGATTCCAATTACTATGATGGAGGACTAACTGAAGCTTCAAGAGAAATGTTCTTGAACAAGCCAGCATTGGACCCGTTATCCTACTATGATTTTCCAATGGGTGCTGCTCAGTCTGGTTTTAACTTACCCATGAGTCAGTATCAGACAAGTCTTAAAGCATCTGATCAGAGTCCTTTTGGACCCAATTCAAGCTACGGATTCCTTTCATTGCCAAGTCTAACCAATTCTGATCATGGAAACGTGTCGGTGACGGAGTTTTCAGACAACAATTCAGCTTCCAAAATCAGTTCATTGCTCATGAATGAGCAGGTGAAAGAAAGTTCCAGCAATAGCTCAAACATGAGCACCATTTACGCTGGAGGAGGGTGTCATATCAGCAGCATGATGGAAAATGCAAGTTTCTCGTGGGAGGGTGACAACAAATTTGACCCTTTGTTTCAGTTCCAAGTAAATGCCACAAAATCCGAGGATTTCAAGACAAGTCCATGGGAAGAGGGGCAGCTTCAGACTCGCAATTCGATAGATTTCACTAGCTTTCCATTAACTTCACTTTCAGAAGATCTAACCGGGGAAAATTTTGATGTATTTCAGCATATATGA 1110 0.4189 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPNTHKPLTEGHVKEEKKITETAPMQTPLSQGLSVPLTFPSSQGTTLLIDSNYYDGGLTEASREMFLNKPALDPLSYYDFPMGAAQSGFNLPMSQYQTSLKASDQSPFGPNSSYGFLSLPSLTNSDHGNVSVTEFSDNNSASKISSLLMNEQVKESSSNSSNMSTIYAGGGCHISSMMENASFSWEGDNKFDPLFQFQVNATKSEDFKTSPWEEGQLQTRNSIDFTSFPLTSLSEDLTGENFDVFQHI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium394g00017 369 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vium394g00017 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium394g00017 369 CDD SANT 70 109 IPR001005 -
Vium394g00017 369 SMART sant 66 114 IPR001005 -
Vium394g00017 369 SMART sant 13 63 IPR001005 -
Vium394g00017 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium394g00017 369 CDD SANT 17 61 IPR001005 -
Vium394g00017 369 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium394g00017 369 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium394g00017 369 Gene3D - 69 143 - -
Vium394g00017 369 FunFam MYB transcription factor 11 67 - -
Vium394g00017 369 PANTHER MYB DOMAIN PROTEIN 55 1 296 - -
Vium394g00017 369 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium394g00017 369 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium394g00017 369 Gene3D - 11 67 - -
Vium394g00017 369 FunFam Transcription factor MYB86 69 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium394g00017 Vium-Chr394 113034 114832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium394g00017 1 131 MYB Transcription Factor Family AT4G01680 85.496 7.73e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium394g00017 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium394g00017 K09422 - gmx:100811140 701.434