Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium394g00015 ATGACGACTAGGTTTAAGAAGAACAGGAAGAAGAGAGGTCATGTGAGCGCCGGGCACGGCCGTATCGGAAAGCACAGAAAGCATCCCGGAGGTCGCGGTAACGCCGGTGGTATGCACCACCACCGTATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGTAAGGTGGGTATGCGCTACTTCCATAAGCTCCGCAACAAGTTCTATTGCCCCATCGTCAACATCGACAAGCTATGGTCCCTTCTCCCCCAGGAGGCCAAGGACAAGGCCACCGCCGACAAAGCTCCCTTGCTCGATGTCACCCAGTTCGGCTACTTTAAGGTTTTGGGTAAAGGTGTTTTGCCTCAGAACCAGCCTCTTGTTGTGAAGGCCAAACTTGTCTCCAAGATCGCCGAGAAGAAGATCAAGGAGGCCGGTGGAGCCGTTGTTCTCACCGCTTAG 441 0.5397 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLLPQEAKDKATADKAPLLDVTQFGYFKVLGKGVLPQNQPLVVKAKLVSKIAEKKIKEAGGAVVLTA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium394g00015 146 Hamap 50S ribosomal protein L15 [rplO]. 1 145 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vium394g00015 146 Gene3D - 58 146 - -
Vium394g00015 146 ProSitePatterns Ribosomal protein L15 signature. 107 139 IPR001196 GO:0003735|GO:0005840|GO:0006412
Vium394g00015 146 SUPERFAMILY Ribosomal proteins L15p and L18e 6 145 IPR036227 -
Vium394g00015 146 FunFam 60S ribosomal protein L27a 58 146 - -
Vium394g00015 146 MobiDBLite consensus disorder prediction 1 35 - -
Vium394g00015 146 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 IPR021131 -
Vium394g00015 146 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium394g00015 Vium-Chr394 88285 88920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium394g00015 1 146 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 86.301 3.74e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium394g00015 K02900 - gmx:100527293 304.293