Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium394g00014 ATGAACCCCTACGACAATAGATACTCTGATCCCGCTTCTTTTCACGCTCGTCGAAGATCTATTCCGCCGCCGTCTCTAGGCGGTCGCGGCGACGTGGTTCCTTATGGCGTCTTTAGGTCCAATGGGTTAGGATCCGCACCCGTTGCTCCGGTTCCACCATTTGTACCCCCTCCTGGAGGTTTTAGCGTAGGACGAGGTAGTGGTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAATACGACATAGGTCGTAGTGGCGGTGGAAGAGGTGGTGGCGGCGGTGGAGGCGGGGTTCACGGTTTTCGGGGCTCCAGGAGAGGAGGTAGACACGATGGTGGATCTTCTAGGGACGATTTGAACAATATTACACTTCCGAAGCAGAGTTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTTGAGTGCCCTGCGTTGAGAGCCATGTCCGAGCAAGAAGTTATGCATTACCGTGCTTCTAGAGAGATCACCGTGCATGGGCATGATGTGCCGAAACCTGTACGGATGTTCCATGAGGCGAATTTTCCTGATTATTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCAATGAAGGGTAGAGATTTAATTGGCATAGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCTCAACCTCGATTGGCACATGGTGACGGTCCCATTGTCTTAGTATTAGCACCAACGAGAGAGCTAGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTCGAACAAATATTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGCGAGCTTAGAAGAGGCGTTGAGATTGTTATTGCGACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTGGACGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGACCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCACAATCCGTACAAGGTAATTATCGGGTCACCAAACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATATCATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGGATTCTAATTTTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGACGTGAAGGACATTAAATGTGTGATCAATTATGACTTTCCATCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCCAAAGGAACTGCTTACACATTTTTTACGCACGCCAATGCCAAGTTTGCTAGGGATCTGATCAAGATTTTACAAGATGCTGGTCAGGATGTGAGTCCTGCATTGTCTGCAATGGTTCGGTCAGCTGGTTCTGGTCAATATGGATCAGGGGGAAGTTTTCGCGCAAGAGGACGTGGAGGCTATGGGAATCGAGGTTTGACATCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCTTGGCAGTATCTATAG 1800 0.4744 MNPYDNRYSDPASFHARRRSIPPPSLGGRGDVVPYGVFRSNGLGSAPVAPVPPFVPPPGGFSVGRGSGRVGNGHVSDRKYDIGRSGGGRGGGGGGGGVHGFRGSRRGGRHDGGSSRDDLNNITLPKQSFKNLVPFEKNFYVECPALRAMSEQEVMHYRASREITVHGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLLWSATWPREVETLARQFLHNPYKVIIGSPNLKANQSINQVVEVVTDMEKYHRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQDVSPALSAMVRSAGSGQYGSGGSFRARGRGGYGNRGLTSGSNAIPLGSKRPWQYL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium394g00014 599 FunFam ATP-dependent RNA helicase RhlB 385 558 - -
Vium394g00014 599 FunFam probable ATP-dependent RNA helicase DDX17 137 384 - -
Vium394g00014 599 SMART ultradead3 194 397 IPR014001 -
Vium394g00014 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 381 IPR014001 -
Vium394g00014 599 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 409 554 IPR001650 -
Vium394g00014 599 CDD DEADc_DDX5_DDX17 187 381 - -
Vium394g00014 599 CDD SF2_C_DEAD 394 524 - -
Vium394g00014 599 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 327 335 IPR000629 -
Vium394g00014 599 Gene3D - 128 379 IPR027417 -
Vium394g00014 599 Pfam Helicase conserved C-terminal domain 405 515 IPR001650 -
Vium394g00014 599 Gene3D - 380 557 IPR027417 -
Vium394g00014 599 MobiDBLite consensus disorder prediction 558 577 - -
Vium394g00014 599 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 175 203 IPR014014 GO:0003724
Vium394g00014 599 MobiDBLite consensus disorder prediction 62 122 - -
Vium394g00014 599 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 154 554 - -
Vium394g00014 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 535 IPR027417 -
Vium394g00014 599 MobiDBLite consensus disorder prediction 1 30 - -
Vium394g00014 599 Pfam DEAD/DEAH box helicase 199 370 IPR011545 GO:0003676|GO:0005524
Vium394g00014 599 SMART helicmild6 434 515 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium394g00014 Vium-Chr394 80070 86634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium394g00014 172 535 Eukaryotic Initiation Factors Gene Family AT3G19760 34.890 3.94e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium394g00014 K12823 - gmx:100817092 954.51