LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium394g00013	ATGAACCCCTACGACAATAGATACTCTGATCCCGCTTCTTTTCACGCTCGTCGAAGCGATTTCATTAGATCTATTCCGCCGCCGTCTCTAGGCGGTCGCGGCGACGTGGTTCCTTATGGCGTCTTTAGGTCCAATGGGTTAGGATCCGCACCCGTTGCTCCGGTTCCACCATTTGTACCCCCTCCTGGAGGTTTTAGCGTAGGACGAGGTAGTGGTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAATACGACATAGGTCGTAGTGGCGGTGGAAGAGGTGGTGGCGGCGGTGGAGGCGGGGTTCACGGTTTTCGGGGCTCCAGGAGAGGAGGTAGACACGATGGTGGATCTTCTAGGGACGATTTGAACAATATTACACTTCCGAAGCAGAGTTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTTGAGTGCCCTGCGTTGAGAGCCATGTCCGAGCAAGAAGTTATGCATTACCGTGCTTCTAGAGAGATCACCGTGCATGGGCATGATGTGCCGAAACCTGTACGGATGTTCCATGAGGCGAATTTTCCTGATTATTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCAATGAAGGGTAGAGATTTAATTGGCATAGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCTCAACCTCGATTGGCACATGGTGACGGTCCCATTGTCTTAGTATTAGCACCAACGAGAGAGCTAGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTCGAACAAATATTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGCGAGCTTAGAAGAGGCGTTGAGATTGTTATTGCGACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTGGACGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGACCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCACAATCCGTACAAGGTAATTATCGGGTCACCAAACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATATCATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGGATTCTAATTTTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGACGTGAAGGACATTAAATGTGTGATCAATTATGACTTTCCATCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCCAAAGGAACTGCTTACACATTTTTTACGCACGCCAATGCCAAGTTTGCTAGGGATCTGATCAAGATTTTACAAGATGCTGGTCAGGATGTGAGTCCTGCATTGTCTGCAATGGTTCGGTCAGCTGGTTCTGGTCAATATGGATCAGGGGGAAGTTTTCGCGCAAGAGGACGTGGAGGCTATGGGAATCGAGGTTTGACATCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCTTGGCAGTATCTATAG	1812	0.4735	MNPYDNRYSDPASFHARRSDFIRSIPPPSLGGRGDVVPYGVFRSNGLGSAPVAPVPPFVPPPGGFSVGRGSGRVGNGHVSDRKYDIGRSGGGRGGGGGGGGVHGFRGSRRGGRHDGGSSRDDLNNITLPKQSFKNLVPFEKNFYVECPALRAMSEQEVMHYRASREITVHGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLLWSATWPREVETLARQFLHNPYKVIIGSPNLKANQSINQVVEVVTDMEKYHRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQDVSPALSAMVRSAGSGQYGSGGSFRARGRGGYGNRGLTSGSNAIPLGSKRPWQYL	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium394g00013	603	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	413	558	IPR001650	-
	Vium394g00013	603	CDD	DEADc_DDX5_DDX17	191	385	-	-
	Vium394g00013	603	FunFam	probable ATP-dependent RNA helicase DDX17	141	388	-	-
	Vium394g00013	603	Pfam	DEAD/DEAH box helicase	203	374	IPR011545	GO:0003676\|GO:0005524
	Vium394g00013	603	CDD	SF2_C_DEAD	398	528	-	-
	Vium394g00013	603	MobiDBLite	consensus disorder prediction	67	126	-	-
	Vium394g00013	603	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	210	385	IPR014001	-
	Vium394g00013	603	FunFam	ATP-dependent RNA helicase RhlB	389	562	-	-
	Vium394g00013	603	SMART	helicmild6	438	519	IPR001650	-
	Vium394g00013	603	MobiDBLite	consensus disorder prediction	562	581	-	-
	Vium394g00013	603	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	158	558	-	-
	Vium394g00013	603	Pfam	Helicase conserved C-terminal domain	409	519	IPR001650	-
	Vium394g00013	603	Gene3D	-	384	561	IPR027417	-
	Vium394g00013	603	SMART	ultradead3	198	401	IPR014001	-
	Vium394g00013	603	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	331	339	IPR000629	-
	Vium394g00013	603	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	251	539	IPR027417	-
	Vium394g00013	603	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	179	207	IPR014014	GO:0003724
	Vium394g00013	603	Gene3D	-	132	383	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium394g00013	Vium-Chr394	80070	86634	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium394g00013	176	539	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.890	4.04e-69	228

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium394g00013	K12823		-	gmx:100817092	966.837