Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium394g00012 ATGAACCCCTACGACAATAGATACTCTGATCCCGCTTCTTTTCACGCTCGTCGAAGCGATTTCATTAGATCTATTCCGCCGCCGTCTCTAGGCGGTCGCGGCGACGTGGTTCCTTATGGCGTCTTTAGGTCCAATGGGTTAGGATCCGCACCCGTTGCTCCGGTTCCACCATTTGTACCCCCTCCTGGAGGTTTTAGCGTAGGACGAGGTAGTGGTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAATACGACATAGGTCGTAGTGGCGGTGGAAGAGGTGGTGGCGGCGGTGGAGGCGGGGTTCACGGTTTTCGGGGCTCCAGGAGAGGAGGTAGACACGATGGTGGATCTTCTAGGGACGATTTGAACAATATTACACTTCCGAAGCAGAGTTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTTGAGTGCCCTGCGTTGAGAGCCATGTCCGAGCAAGAAGTTATGCATTACCGTGCTTCTAGAGAGATCACCGTGCATGGGCATGATGTGCCGAAACCTGTACGGATGTTCCATGAGGCGAATTTTCCTGATTATTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCAATGAAGGGTAGAGATTTAATTGGCATAGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCTCAACCTCGATTGGCACATGGTGACGGTCCCATTGTCTTAGTATTAGCACCAACGAGAGAGCTAGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTCGAACAAATATTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGCGAGCTTAGAAGAGGCGTTGAGATTGTTATTGCGACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTGGACGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGACCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCACAATCCGTACAAGGTAATTATCGGGTCACCAAACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATATCATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGGATTCTAATTTTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGCCCGGTCGACTCATGCATGCTTAGTCAATAATTGGATGTGGTAG 1509 0.4751 MNPYDNRYSDPASFHARRSDFIRSIPPPSLGGRGDVVPYGVFRSNGLGSAPVAPVPPFVPPPGGFSVGRGSGRVGNGHVSDRKYDIGRSGGGRGGGGGGGGVHGFRGSRRGGRHDGGSSRDDLNNITLPKQSFKNLVPFEKNFYVECPALRAMSEQEVMHYRASREITVHGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLLWSATWPREVETLARQFLHNPYKVIIGSPNLKANQSINQVVEVVTDMEKYHRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLARSTHACLVNNWMW 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium394g00012 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 488 IPR027417 -
Vium394g00012 502 Gene3D - 392 499 IPR027417 -
Vium394g00012 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 387 IPR027417 -
Vium394g00012 502 CDD DEADc_DDX5_DDX17 191 385 - -
Vium394g00012 502 MobiDBLite consensus disorder prediction 67 126 - -
Vium394g00012 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 385 IPR014001 -
Vium394g00012 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 156 490 - -
Vium394g00012 502 Pfam Helicase conserved C-terminal domain 409 488 IPR001650 -
Vium394g00012 502 CDD SF2_C_DEAD 398 488 - -
Vium394g00012 502 FunFam probable ATP-dependent RNA helicase DDX17 141 388 - -
Vium394g00012 502 SMART ultradead3 198 401 IPR014001 -
Vium394g00012 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 331 339 IPR000629 -
Vium394g00012 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Vium394g00012 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 502 IPR001650 -
Vium394g00012 502 Gene3D - 152 391 IPR027417 -
Vium394g00012 502 Pfam DEAD/DEAH box helicase 203 374 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium394g00012 Vium-Chr394 80068 86164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium394g00012 176 498 Eukaryotic Initiation Factors Gene Family AT3G19760 31.889 7.35e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium394g00012 K12823 - gmx:100817092 793.497