Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium394g00010 ATGTCTCCTTCAAAAATCCTCGTTGCCGGTGAAATACCATATTCCGGCATGTGGTTGGTTATTCTTCTTCTTCACCTCGCTGTCTTTGCGACTCCTTCACTTTGCTTGGACTTCCTATTCAACTCCTTCACCGGCATAACCAACCTCACTTTGGTGAAAGACGCTCGCGTGGACGCATCGGTCATCCGCATGACCAACGACTCCAACCAGTACTCCTATGGACGCGTCTTCTATCCCACAAAAGTTCCCATCACAAAACCTTCTTCCAATTCCTCATCCTCATCCATCACTTCATTCTCAACCTCTTTTGTCTTCTCCGTCTTGCCGCAAATCACTACCAGTCCTGGCTTTGGCCTCGCCTTCGTCCTCTGCAACACCACTGACCCTCCCGGAGCCCTCGCCAGCCAGTACTTCGGCCTATTCACCAACGCCACCTCCCCCACCTTTTTCCCCCTTGTCGCCGTCGAATTCGACACCGGCCAGAACCCTGAATTCAACGACATCGACGACAACCACATCGGCATCGACCTCAACAACATCGAATCCACCTTCTCCACCCCTGCCGGCTACTACAATTCCACCGGGGGGTTCGTGCCGGTGCGTATGCGAACCGGCCAGAATATCCGAGCCTGGATCGATTTTGATGGCCAGAATCTGCTGTTCAACGTAACGGTGGCGCCAATCGGCGTTTCGCGCCCGACGCGGCCTACGCTTTCACATTATGTTCCTACCATAGGTAACTACGTGTCAACTGACATGTACGTTGGGTTTTCAGCTTCCAAAACGAACTGGATCGAGGCGCAGAGGGTTCTGGCATGGAGCTTCAGTGATTCAGGGCAAGCGAGGGAGCTGAACACGACAAACTTACCGGTGTTCGAACCGGAATCGTCGACTTCCTCGCTTTCTGGCGGCGCAATAGCGGGGATTGTTATTGGTTGTGTAGTTTTTGTGGTTATATGCGGTTGTGGTGTTTACTTATGGTGGCGAATCCAGAAAGGGAAAGACGAACAAGACGAGATCGAGGATTGGGAGCTAGAGTACTGGCCACATAGATTCTCGTACGAGGAATTGAGTTCTGCAACAGGGGAATTTGGGAAGGAGCAGCTGTTAGGTTCGGGAGGGTTCGGGAGAGTGTACAAAGGGACGTTGCCGAACAAGACACAGATTGCAGTGAAGTGTGTGAACCACGATTCGAAGCAAGGGCTGCGGGAATTCATGGCGGAGATAGAGAGTATGGGGAGGCTTCAGCACAAGAACTTGGTTCAAATGCGAGGGTGGTGTAGAAAGGGTAACGAGCTTATGCTTGTTTATGATTACATGCCTAATGGGAGTCTCAACAGGTGGGTTTTCGATCGCCCCGAGAAGCTTCTAGGGTGGGAGCAACGCCGTCGTATCCTTGTCGACGTGGCGGAGGGGCTTAACTACCTTCACCATGGTTGGGATCAGGTCGTTATTCACCGAGATATTAAGTCCAGTAACATATTATTGGACGCCGACATGCGAGGGAGACTCGGGGACTTTGGTTTGGCCAAGCTTTACACGCACGGGGAGGTTCCCAACACCACACGTGTGGTGGGGACGCTGGGTTACTTGGCGCCGGAGCTGGCCACGGTTGCGGCGCCGACGTCCGCGAGTGACGTCTACAGCTATGGAGTGGTACTGTTGGAGGTGGCGTGCGGGAGGCGGCCCATTGAGACTTCGGTGGCAGAGGAGGAGGTGGTGCTCATCGATTGGGTGAGGGAGTTGTACGCGAAGGGGTGCGCGCGTGAGGCTGCCGATGCGAGGATCGAAGGGGAGTACGACGAGGAAGAAATGGAGATGGTTTTGAAGCTTGGCTTGGCTTGTTGCCACCCTGACCCCCAGAGGAGACCCACCATGAAGGAAGTCGTCGCGCTTCTCCTTGGAGAGAATCCGCCGGAGGCTCCCGGAAAAGTCTTGTCCGATTTGGTTCGCGGCGGCGACGATCTCGATGAGGCGGCCCCTTTACAACCCTCCTCCACGCGGGTTTGA 2010 0.5438 MSPSKILVAGEIPYSGMWLVILLLHLAVFATPSLCLDFLFNSFTGITNLTLVKDARVDASVIRMTNDSNQYSYGRVFYPTKVPITKPSSNSSSSSITSFSTSFVFSVLPQITTSPGFGLAFVLCNTTDPPGALASQYFGLFTNATSPTFFPLVAVEFDTGQNPEFNDIDDNHIGIDLNNIESTFSTPAGYYNSTGGFVPVRMRTGQNIRAWIDFDGQNLLFNVTVAPIGVSRPTRPTLSHYVPTIGNYVSTDMYVGFSASKTNWIEAQRVLAWSFSDSGQARELNTTNLPVFEPESSTSSLSGGAIAGIVIGCVVFVVICGCGVYLWWRIQKGKDEQDEIEDWELEYWPHRFSYEELSSATGEFGKEQLLGSGGFGRVYKGTLPNKTQIAVKCVNHDSKQGLREFMAEIESMGRLQHKNLVQMRGWCRKGNELMLVYDYMPNGSLNRWVFDRPEKLLGWEQRRRILVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDADMRGRLGDFGLAKLYTHGEVPNTTRVVGTLGYLAPELATVAAPTSASDVYSYGVVLLEVACGRRPIETSVAEEEVVLIDWVRELYAKGCAREAADARIEGEYDEEEMEMVLKLGLACCHPDPQRRPTMKEVVALLLGENPPEAPGKVLSDLVRGGDDLDEAAPLQPSSTRV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium394g00010 669 Gene3D Phosphorylase Kinase; domain 1 349 439 - -
Vium394g00010 669 FunFam L-type lectin-domain containing receptor kinase S.1 349 439 - -
Vium394g00010 669 FunFam L-type lectin-domain containing receptor kinase S.4 34 283 - -
Vium394g00010 669 Pfam Protein kinase domain 366 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium394g00010 669 MobiDBLite consensus disorder prediction 643 669 - -
Vium394g00010 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 292 IPR013320 -
Vium394g00010 669 ProSitePatterns Legume lectins beta-chain signature. 153 159 IPR019825 -
Vium394g00010 669 CDD STKc_IRAK 370 633 - -
Vium394g00010 669 Gene3D Transferase(Phosphotransferase) domain 1 440 641 - -
Vium394g00010 669 Gene3D - 35 295 - -
Vium394g00010 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Vium394g00010 669 ProSiteProfiles Protein kinase domain profile. 364 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium394g00010 669 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Vium394g00010 669 SMART serkin_6 364 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium394g00010 669 Pfam Legume lectin domain 36 289 IPR001220 GO:0030246
Vium394g00010 669 FunFam L-type lectin-domain containing receptor kinase S.4 440 644 - -
Vium394g00010 669 PANTHER - 53 637 - -
Vium394g00010 669 CDD lectin_legume_LecRK_Arcelin_ConA 36 279 IPR001220 GO:0030246
Vium394g00010 669 SUPERFAMILY Protein kinase-like (PK-like) 339 633 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium394g00010 Vium-Chr394 62822 65125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium394g00010 31 635 Receptor kinase-like Gene Family AT1G15530 67.869 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium394g00010 Pkinase 3.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium394g00010 - - gmx:100780660 1114.37