Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium394g00009 ATGGGATCTAAACTCCTGCATAACAATAACAACGGAAATAATACTATTAAGTTCCTCTGTAGCTACGGCGGCAAGATCCTTCCTCGCCGCACCGACGGCATCCTCCGATACTACGGCGGCCACACCAGAGTCCTCGCTTTTCCTTCCACTTCATTCTCAGAGTTAATGACAAAGATTAGCGAGCTGTGCGGTTCGCCGGCGACACTCCGGTGTCCTTTGCCAAACGGGGACTTGGACACCTTGATTTCCGTCAAAAACGACGAAGATTTGGCAAATATAATCGAGGAATACGATCGAGTTTCTTCGTCCTTACCTCATCGGTTGAAGATCAGAGCCATTCTTTCGCCGCTGGACAAATCATCTCCTTCTCCATCTTCTTCGTCCAGCGCCTCTCACACTCCGCCTGGTTCGCCTCACTCATCCGCCAGTTCCCCGCCGTGTTCTGAGGCTCACCGATTCGGCTGCCGGAACTGCTCGCCAACTGCGTATTCTATATGCCCCCGTAACGGAGCGGCAAAATCCGGTTCGTATCACTCCTCTCCCTGTTCCTTGCCGTGCTACGCGGTGCACCGGTTCCGTTGCCGGAATTGTTCCTCGGGTGCGTATCTTACCAGCATCCGTAATGGAGCGGCTAAATCCAGTTCTCCTCACTCCTCCGGCGGCTCCCCGCCGTATTCCACAGCCCACCGGTTCGGCTGCCAGAATTGCTCGCCGATTTCGTATCCAATTGGCGTCTGTAACGCGGCGGTAAAAGGATGTTAG 762 0.5407 MGSKLLHNNNNGNNTIKFLCSYGGKILPRRTDGILRYYGGHTRVLAFPSTSFSELMTKISELCGSPATLRCPLPNGDLDTLISVKNDEDLANIIEEYDRVSSSLPHRLKIRAILSPLDKSSPSPSSSSSASHTPPGSPHSSASSPPCSEAHRFGCRNCSPTAYSICPRNGAAKSGSYHSSPCSLPCYAVHRFRCRNCSSGAYLTSIRNGAAKSSSPHSSGGSPPYSTAHRFGCQNCSPISYPIGVCNAAVKGC 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium394g00009 253 PANTHER OS05G0427100 PROTEIN-RELATED 14 205 - -
Vium394g00009 253 SMART PB1_new 30 115 IPR000270 GO:0005515
Vium394g00009 253 SUPERFAMILY CAD & PB1 domains 32 117 - -
Vium394g00009 253 Pfam PB1 domain 35 108 IPR000270 GO:0005515
Vium394g00009 253 CDD PB1_UP2 19 114 - -
Vium394g00009 253 MobiDBLite consensus disorder prediction 118 145 - -
Vium394g00009 253 Gene3D - 35 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium394g00009 Vium-Chr394 41170 42502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium394g00009 16 124 MAP Kinase Kinase Kinase AT1G04700 46.364 1.22e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium394g00009 - - vun:114177582 396.356