Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3944g00002 ATGCCCCATGGACCTAGAAAGCTACCTATTATAGGAAATATGCACAATCTGTTATGTTCTCTGCCCCATAGAAAATTAAGAGACCTGGCCTTAAAATATGGACCCTTGATGCATCTTCAACTTGGAGAGGTTTCTACCATTGTCATTTCATCCCCTGAGTGTGCTAAGGAAGTGTTGAAAACCCATGATATTAACTTTGCCACAAGGCCTAAAGTCCTAGCTATTGATGTAATCAATTACAACTGCACAAACATTGCTTTCGCTCCTTATGGAGATTATTGGAGGCAACTAAGAAAAATTTGCGCATTAGAGCTTTTAAGCCTAAAACGTGTCAACTCATACCAGCCAATCAGAGAAGAGGAGCTCTTCAATCTTGTCAAATGGATAGATGCGCAGAAAGGATGTCCCATTAACCTCACCGAAGCTGTTCTTTCATCAATTTATGCAATTGCTTCAAGGGCTGCCTTTGGCAAGAAATTCAAAGACCATGAAAAATTTATATCAGTGATTAACAAAATAACCAAAGTTGCTGGAGGTTTTTACATTGGAGATTTCTTTCCTTCCTCTGTTTGGTTGCAACATGTCACTGGCATGAGGCATAAGCTCGAGAGGGTGCATCAAGAAGCTGATCAGATAATGGAAAACATCATCAATGAGCATAAGGAGACAAAGTCTAAGGCCAAAGGTGACCAAAGGGAAGCGACAGATCTTGTGGATGTTCTCATACAGTATGAAGATGGTAACCAACAAGATTTTTCTTTAACTAGGAACAACATCAAGGCAATAATTCTGGACATTTTTGGTGGTGGTGGCGAGACATCATCAACAACCATAGATTGGGCAATGGCTGAAATGATGAAGGATTCAAGAATAATGAAAAAAGCACAAGCTGAGGTTAGAGAGGTATTCAACATGAAAGGAAGGGTTGATGAAAATTTTCTCGATGAACTGAAATATTTGAAAGTAGTTGTGAAAGAGACCTTGAGATTACACCCTCCAACTCCTCTTTTGCTTCCAAGAGAATGTGGTCAAACATGTGAGATACATGGCTATCACATACCTGCCAAAAGCAAAGTCATAGTCAATGCTTGGGCAATTGGAAGAGATTCAAACTATTGGACCGAACCAGAAAGGTTTTATCCTGAGAGATTCATTGATAGCAGTATTGACTACAAGGGGAGTGATTTTGAATACCTTCCTTTTGGAGGTGGAAGAAGGATATGCCCAGGCAGCACATTTGCTATTAGAAATCTTGAACTTGCCCTTGCAATGTTGTTGTATCACTTTGATTGGAAACTTCCCAGTGGAATCACAAGTGAAGAATTGAACATGAGTGAGGTGTTTGGGCTCACAATGAGAAGAAAAGATGAACTGTACCTGGTCCCTTTTCCTTATCATCCTTTGCCTGTCATATGA 1416 0.3997 MPHGPRKLPIIGNMHNLLCSLPHRKLRDLALKYGPLMHLQLGEVSTIVISSPECAKEVLKTHDINFATRPKVLAIDVINYNCTNIAFAPYGDYWRQLRKICALELLSLKRVNSYQPIREEELFNLVKWIDAQKGCPINLTEAVLSSIYAIASRAAFGKKFKDHEKFISVINKITKVAGGFYIGDFFPSSVWLQHVTGMRHKLERVHQEADQIMENIINEHKETKSKAKGDQREATDLVDVLIQYEDGNQQDFSLTRNNIKAIILDIFGGGGETSSTTIDWAMAEMMKDSRIMKKAQAEVREVFNMKGRVDENFLDELKYLKVVVKETLRLHPPTPLLLPRECGQTCEIHGYHIPAKSKVIVNAWAIGRDSNYWTEPERFYPERFIDSSIDYKGSDFEYLPFGGGRRICPGSTFAIRNLELALAMLLYHFDWKLPSGITSEELNMSEVFGLTMRRKDELYLVPFPYHPLPVI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3944g00002 471 CDD CYP71-like 32 458 - -
Vium3944g00002 471 PRINTS P450 superfamily signature 399 408 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS P450 superfamily signature 408 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS P450 superfamily signature 269 286 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS P450 superfamily signature 322 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 SUPERFAMILY Cytochrome P450 2 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 FunFam Cytochrome P450 71D8 1 462 - -
Vium3944g00002 471 PRINTS E-class P450 group I signature 398 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS E-class P450 group I signature 278 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS E-class P450 group I signature 30 49 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS E-class P450 group I signature 146 164 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS E-class P450 group I signature 258 275 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS E-class P450 group I signature 408 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS E-class P450 group I signature 362 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS E-class P450 group I signature 321 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PRINTS E-class P450 group I signature 54 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 PANTHER OS08G0105600 PROTEIN 25 467 - -
Vium3944g00002 471 Pfam Cytochrome P450 2 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 401 410 IPR017972 GO:0005506|GO:0016705
Vium3944g00002 471 Gene3D Cytochrome P450 1 459 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3944g00002 471 Coils Coil 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3944g00002 Vium-Chr3944 28800 30866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3944g00002 5 462 Cytochrome P450 AT3G26310 43.404 1.15e-136 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3944g00002 - - gmx:100778572 796.578