Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3942g00001 ATGGGAAGGCCACCATGCTGTGAGAAGACAGGCCTCAAGAAAGGACCATGGACACCAGAAGAAGACCAAAAGCTCATGGCTTTCATTGAAAACCATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGGCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGGTGGACTAATTATCTGAGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAACAAACCATTATTCAACTTCATGCTCTTCTGGGAAACAGATGGTCAGCCATAGCATCTCACTTGCCGAAGAGAACTGACAATGAGATCAAGAACTATTGGAACACCCATCTCAAGAAAAGGCTCGACAAATTGGGCATCGATCCGACCACGCACAAACCAAAAATGGAGTCCCTCATCCACTTCAAAGACGGTTCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTCGAAGCCGAAGCCAGACTCGTACGAGAATCCAAGTTGCAGGAACAAAACAACATCGTATTAACCTCTTCCTCACCACCACCACGACAACCTAGACTCATTCTCAACAAAATCACACCCCAACACCACCACCAACCCTCACTACCACCGTGCCTCGACGTCCTCAAAGCATGGCAAAGTTCATGCTCAGAAAATAAAAACAACAACCAGAAATACTCATCAGTACACGACAAGAAGAAAACCGTGCATGTGCATAGCATGTATGCCATGATGCTTGCCACTGATGACCTTGAATCCCCAACATCCACCTTGTGTTTCCCTGAGAGTATGCAAATGAATAATAGTAACAATAATAATAGCAATAGCATTATGGTGTCGACCAACCAAGTTGGGTTAATCAATGAGAACTATTTACTCCCTCCAACTGCTGTGGAAGAGTTTATGACGGTAGCAACGGTGAAGGAAGATGCTTGTTGTGGCGGTGATGGTGACAGCAGTGAGTCGTGGAGGTACTTCACCAAACGCAACAGTGATCGTGATGAAGAATTAGCTGAAACTGCGAAGAGAATTATGTACCAGACGATGCCATGTTTGCAAGATGATGACATAATGGTGGCTGTTGATGCATTAAGAGGTGGTGGATATTATGGTAATAATGATGATACTATTAATAATGATGTGGTGGCATTTACACCTCTCTCTAGCAATGTCAATATGGTTGTTGGTTTCAATAACGACGTCCAGGATTTTGATTCCAACCAAGATTTAGCGACGGAGAACTTGGAAGTGCACTTCGAGGAGAATAAGGATTATTGGAATAGCGTGCTTGGTTATAAGTGA 1296 0.4452 MGRPPCCEKTGLKKGPWTPEEDQKLMAFIENHGHGSWRALPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKLGIDPTTHKPKMESLIHFKDGSNLSHMAQWESARLEAEARLVRESKLQEQNNIVLTSSSPPPRQPRLILNKITPQHHHQPSLPPCLDVLKAWQSSCSENKNNNQKYSSVHDKKKTVHVHSMYAMMLATDDLESPTSTLCFPESMQMNNSNNNNSNSIMVSTNQVGLINENYLLPPTAVEEFMTVATVKEDACCGGDGDSSESWRYFTKRNSDRDEELAETAKRIMYQTMPCLQDDDIMVAVDALRGGGYYGNNDDTINNDVVAFTPLSSNVNMVVGFNNDVQDFDSNQDLATENLEVHFEENKDYWNSVLGYK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3942g00001 431 CDD SANT 69 112 IPR001005 -
Vium3942g00001 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium3942g00001 431 CDD SANT 16 61 IPR001005 -
Vium3942g00001 431 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 268 - -
Vium3942g00001 431 Gene3D - 69 116 - -
Vium3942g00001 431 FunFam MYB-related transcription factor 13 66 - -
Vium3942g00001 431 Gene3D - 13 66 - -
Vium3942g00001 431 FunFam MYB transcription factor 69 116 - -
Vium3942g00001 431 SMART sant 66 114 IPR001005 -
Vium3942g00001 431 SMART sant 13 63 IPR001005 -
Vium3942g00001 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium3942g00001 431 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium3942g00001 431 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium3942g00001 431 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium3942g00001 431 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium3942g00001 431 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3942g00001 Vium-Chr3942 6865 10074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3942g00001 1 179 MYB Transcription Factor Family AT3G01140 77.540 3.14e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3942g00001 Myb_DNA-binding 2.2e-14 CL0123