Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3941g00007 ATGGCTGCTTCTTCCCTTATCTTCAACAGTTCACTATCCTTTAACTTCTCCCACACTGTCATATCCTTCAAACCTCAAAACCTCGAGCCACAATTTTCCATTTCTTCTGCGATCTCACTTTGCCATCTTCCCCTGTCTTTGGTTTCCTTCCAAGACACTCAAAACCCCATACAGGATGAAACCCTGAAAAAAACAGAGCCAAATGCCTCACTCTTCAACCATTCAGCGAGACTCTTTGTGGGAAACTTGCCTTATTCGTTGCCCTCTTCTCAGTTGGCTCAGCGGTTTGGAGAGGCTGGCAATGTTGTATCTGTTGAGATTGTGTATGATGACATTACGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTGGAGGAAGCTGAATGTGCAATTCGAATGTTTGATGGCTCTGAAATTGGAGGTAGGATTATTAAGGTAAACGTCGCAGAAATACCCAGAAAAGGAAAATGGAGAGTAATGGGTTCAAACTATAGAGGCTTTGTAGACAGCCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTGTGACTTCACAGTGTCTTAGAGATGCCTTTGTTGAGCTGCCAGGCTTCCTAAGTGCCAAAGTCATCTATGAAAGGAACAGTGGGAAGTCTCAGGGATATGGGTTTGTCTCTTTTCGAACTGCTGAGGATGTAGAGGCTGCTTTGAATTCTATGTATGGAGTGGAAGTTCAAGGCAGGCCCTTACGACTGAATCTAGCTGCAGGATAA 762 0.4462 MAASSLIFNSSLSFNFSHTVISFKPQNLEPQFSISSAISLCHLPLSLVSFQDTQNPIQDETLKKTEPNASLFNHSARLFVGNLPYSLPSSQLAQRFGEAGNVVSVEIVYDDITDRSRGFAFVTMGSVEEAECAIRMFDGSEIGGRIIKVNVAEIPRKGKWRVMGSNYRGFVDSPHKIYAGNLGWGVTSQCLRDAFVELPGFLSAKVIYERNSGKSQGYGFVSFRTAEDVEAALNSMYGVEVQGRPLRLNLAAG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3941g00007 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 148 IPR000504 GO:0003723
Vium3941g00007 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 247 IPR000504 GO:0003723
Vium3941g00007 253 SUPERFAMILY RNA-binding domain, RBD 75 251 IPR035979 GO:0003676
Vium3941g00007 253 PANTHER OS02G0815200 PROTEIN 58 251 - -
Vium3941g00007 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Vium3941g00007 253 Gene3D - 49 161 IPR012677 -
Vium3941g00007 253 Gene3D - 165 253 IPR012677 -
Vium3941g00007 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 253 IPR000504 GO:0003723
Vium3941g00007 253 SMART rrm1_1 176 249 IPR000504 GO:0003723
Vium3941g00007 253 SMART rrm1_1 77 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3941g00007 Vium-Chr3941 20548 22802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3941g00007 78 251 Eukaryotic Initiation Factors Gene Family AT2G36660 27.222 9.84e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3941g00007 - - vra:106769956 471.855