Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3941g00005 ATGAACGACTTGATTTCCGGTTCCTTCTCTCGCTTCCGCAGCGACCCGGCCTCCCCGGACCGCCACCACGTCATCGAGATGTCCGGCGTCGGTGACGGACACGCCGGCGGGAAAGTGAACCTCGACAAGTTCTTTGAGGACGTGGAGGGGGTGAAGGAGGAGTTGAAGGAGTTGGAGGGACTGGCGCAGAGTCTGAGGAGCAGCCACGAGAAGAGCAAGACGCTGCACAACGCCAACGCCATCAGGGACCTCCGTTCGCGCATGGACGGTGACGTTTCGGTGGCTCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCTCTCGACCGCTCCAACGCCGCCAACCGGAACCTGCCAGGCTGCGGACCCGGTTCCTCCTCGGACCGGACCCGGACCTCTGTGGTCAACGGGCTGAAGAAGAAGCTGAGGGACTCCATGGAGAACTTCAACGAGATTCGGCAGCTCGTGTCGTCGGAGTACCGGGAGACTGTGCAGCGCCGCTACTTCACCGTCACCGGCGAGAATCCCGATGATAAAACGCTCGATCTCTTGATCTCCACTGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAGCAAGGCAGGGGTAGGATTCTGGACACCATCAATGAGATTCAAGAGAGACATGATGCTGTCAAAGAGTTGGAGAAGAGTCTCAAGGAGTTGCACCAAGTATTCCTTGACATGACAGTATTGGTGCAACATCAAGGTGAACAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCAATCGTTTGTGCACACTGGAACTGAGCATTTGCAGACTGCACGAAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATCATACTTCTTCTGGTGATCATCTTGGTTGTGGTGCTCTTCACTCTGAGACCATGGGAAAAAAGCAGTAGTGGCGGCAATGGTGGTAATCAGTCTCCAGCAGCCCCAACAACACCTTCGCCTCCACCTCCTGCTTAG 999 0.5495 MNDLISGSFSRFRSDPASPDRHHVIEMSGVGDGHAGGKVNLDKFFEDVEGVKEELKELEGLAQSLRSSHEKSKTLHNANAIRDLRSRMDGDVSVALKKAKLIKLKLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLRDSMENFNEIRQLVSSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAQSFVHTGTEHLQTARKHQKNTRKWTCYCIILLLVIILVVVLFTLRPWEKSSSGGNGGNQSPAAPTTPSPPPPA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3941g00005 332 SMART SynN_4 36 162 IPR006011 GO:0016020
Vium3941g00005 332 MobiDBLite consensus disorder prediction 1 20 - -
Vium3941g00005 332 Pfam SNARE domain 247 299 IPR000727 -
Vium3941g00005 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Vium3941g00005 332 MobiDBLite consensus disorder prediction 308 332 - -
Vium3941g00005 332 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium3941g00005 332 CDD SNARE_syntaxin1-like 210 272 - -
Vium3941g00005 332 Gene3D - 39 171 - -
Vium3941g00005 332 Coils Coil 211 231 - -
Vium3941g00005 332 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Vium3941g00005 332 PANTHER SYNTAXIN 67 294 IPR045242 -
Vium3941g00005 332 CDD SynN 41 198 IPR006011 GO:0016020
Vium3941g00005 332 FunFam Syntaxin 132 204 304 - -
Vium3941g00005 332 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Vium3941g00005 332 Coils Coil 41 68 - -
Vium3941g00005 332 SMART tSNARE_6 206 273 IPR000727 -
Vium3941g00005 332 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Vium3941g00005 332 Gene3D - 207 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3941g00005 Vium-Chr3941 11964 14499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3941g00005 33 329 SNARE and Associated Proteins AT3G11820 73.684 1.76e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3941g00005 K08486 - gmx:100809258 521.161