Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3940g00002 ATGGGCTTTCGTTTACCCGGTATCAGAAGGACTTCATCTGGGAGAAATCAATCATCTTCAAAAGTGTTGGATGCGCCAAAGGGATACCTTGCAGTCTATGTCGGAGAGAATATGAAACGATTTGTGATTCCTGTATCACACTTGAACCAACCTCTATTCCAAGACTTGTTGAGTCAAGCTGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCACAATTCCTTGCAGCGAAGATCTCTTCCAACATATAACTTCTCGTTTGAGTGAACAATAA 279 0.4265 MGFRLPGIRRTSSGRNQSSSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSRLSEQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3940g00002 92 MobiDBLite consensus disorder prediction 1 21 - -
Vium3940g00002 92 Pfam Auxin responsive protein 11 89 IPR003676 GO:0009733
Vium3940g00002 92 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 89 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3940g00002 Vium-Chr3940 27769 28336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3940g00002 17 85 Calmodulin-binding Proteins AT3G43120 52.174 3.93e-20 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3940g00002 - K14488 gmx:100793401 157.532