Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3935g00007 ATGAAGCCACAGCTCAAAATTGCTCTTGCTCTAGTTATTAGCTTGCTTTGGATTCAGAGCTCATTTTGTGATGAAGCTTCTGATAACCTAAACAAGTGGAGATGTAGATGTTCTTTTGAAGGGAATCGGAGTTTCTCTCTGGCTAATTGTTCTAAGTCCTGTGATTGCCACTCAGATGCTGAAGAAAGTGCATCCGTATGGAAATGCATATGCGATTCAAATGGGTTTCCCCAAGTGGCAGCAGATGGTCATAGCCCTAATTGTTTTAAAGCTTGCAACTGCACTTGGGGAACTGTCAGCAATAGGGGAGGTTCAAAGAAACGTGTTTCCATCAAGATTGTTGTAGTTATCCTATTAATATGTGTTATATGCACAACCATGGCGTTTCTTGTCTCACTCTTATGCCATGTATACAGAAGGGACAGATGTACTATTCAATCACCCATATTCTCAACATATAAGGAAACAAGTAGTGGTAGTTCCACCAACTTAATTAGTCATAGGTCAGGGGTTTCCTCGGTGCCAGAAGCAAAATTTGCTATAAATTCTCCAATTTGTCATATTACAGGATGCTTTCAGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTACCATGGAAATATTTTTCCATTTTCCTTAGCTGAACTGGAAAATGCCACTGAAAACTTTTCCTCTTCCAACCTGATTGGACTAGGCGGAAGCAGTTATGTATACCATGGTCGGCTGAAAGATGGTAGCAATGTGGCAGTTAAACGACTAAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTATCTAGACTTCATCATTGTCATTTGGTGCCTTTGCTCGGATACTGTTCAGAGTTAAAAGGAAAACATGTTCAGAGGTTACTTGTATTTGACTACATGGCTAATGGAAATTTGAGGGACTGTTTAGATGGAGTTTCTGGAAAACATATAGATTGGACTACTCGTGTAATGATTGCGTTAGGAGCTGCGAAGGGCTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACCTGAGATCTGATGACCTCCCTAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGTACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCTCTTGAGTCAGATGTCTTTAGTTTTGGTGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAGCCCATCCATAAATCAACTGGCAAAGAAGAAAGCCTTGTTATATGGGCTACTCCTCGCTTACAGGATAGTAGGCGAGTAATAATTGAGCTGGTTGATCCACAATTAAAAGGAAATTTTCCAGAAGAAGAGGTGCAGGTGATGGCATACTTAGCAAAGGAGTGTTTGCTGCTAGACCCTGACACTCGACCAACCATGAGTGAGGTTGTTCAGATTCTTTTAAGTATTTCCCCAGGAAAATCTAGGAGGAGAAGAAACATTACAGGCAGCCTCTTTCAGGATGAAGAAAAGCAAAGGCAAGCCACACCCAGTAAATTTCCAACGCATAGTTCACTGCCAATATATCTTGATCATAATCATTCTGTTAAGAACAAAAGTAATGAAGCAGATCCAGTTTCAGCTGAGTATATGGAGAGTTTGATCATCTTGGCTGCAAAATCTGATGGCTCTTGTGTATCAGAAGAGGAAATGGTAGACCTAACTGAGCCTAGGTTTGAATCCTTTTGCATCACCTCTGGCAAAGCCCCTTGA 1824 0.4106 MKPQLKIALALVISLLWIQSSFCDEASDNLNKWRCRCSFEGNRSFSLANCSKSCDCHSDAEESASVWKCICDSNGFPQVAADGHSPNCFKACNCTWGTVSNRGGSKKRVSIKIVVVILLICVICTTMAFLVSLLCHVYRRDRCTIQSPIFSTYKETSSGSSTNLISHRSGVSSVPEAKFAINSPICHITGCFQKASFLFGSPKETYHGNIFPFSLAELENATENFSSSNLIGLGGSSYVYHGRLKDGSNVAVKRLKDQGGPEADSAFFKEIELLSRLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGVSGKHIDWTTRVMIALGAAKGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSTGKEESLVIWATPRLQDSRRVIIELVDPQLKGNFPEEEVQVMAYLAKECLLLDPDTRPTMSEVVQILLSISPGKSRRRRNITGSLFQDEEKQRQATPSKFPTHSSLPIYLDHNHSVKNKSNEADPVSAEYMESLIILAAKSDGSCVSEEEMVDLTEPRFESFCITSGKAP 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3935g00007 607 ProSiteProfiles Protein kinase domain profile. 225 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3935g00007 607 FunFam receptor-like serine/threonine-protein kinase NCRK 199 305 - -
Vium3935g00007 607 Pfam Protein kinase domain 227 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3935g00007 607 Gene3D Phosphorylase Kinase; domain 1 200 305 - -
Vium3935g00007 607 SMART serkin_6 225 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3935g00007 607 PANTHER OS01G0750732 PROTEIN 61 520 - -
Vium3935g00007 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Vium3935g00007 607 CDD STKc_IRAK 231 507 - -
Vium3935g00007 607 FunFam receptor-like serine/threonine-protein kinase NCRK 306 516 - -
Vium3935g00007 607 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Vium3935g00007 607 SUPERFAMILY Protein kinase-like (PK-like) 205 504 IPR011009 -
Vium3935g00007 607 MobiDBLite consensus disorder prediction 520 541 - -
Vium3935g00007 607 Gene3D Transferase(Phosphotransferase) domain 1 306 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3935g00007 Vium-Chr3935 73656 81235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3935g00007 1 605 Receptor kinase-like Gene Family AT2G28250 51.391 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vium3935g00007 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3935g00007 - - gmx:100817870 1088.56