Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3931g00001 ATGGAAGGTGTTGATCAAAGTAATTTGAAACGAAATGGTAGTGGTTTTGGTTCATCATCGGGAGCAAATCTCAGGCCCCCAAATCGATTGAATACTGCTGTGCCTGTTAGTCAATTGGGTGTTGCTGAGAATCAGAAACCCTATGGTATACCACCCTCACACCCTAATACGAATATTTCACCTTCTTCAGCCTATCCTCAGTTTTTTGGCTCCCAATCCCATTCCAATTCGGTTTCTCAGCGTTTGGGTTCTCCCAATTTGAGTTCTGTTTCATCCCATTCTAGGTCTCTGTCTCAGCCCTCTTTTTTCTCTCTGGATTCCTTGCCCCCATTGAGTCCTTCTCCTTATAGGGAGCCATCTGTTTCTGACCCAATTTCATTAGATTTGTCTGCTGAGGAAAGCTTGGTTAACCCACATGCCCCTTTGCCTAATCGTGGTCCTGCACTTCAGCTTGGCCATTCTCTTCCACCTCGGAAAGGACACAGGCGATCCAGCAGTGATTCCCCTTTGGGAATCTCTGATTTTATCCAGTCTGCCCCTCAGTCGGTTCCCTCCAGGACTTGGAGTGATCGTGATGTTTCTAGGGGAGGGAACTCAGGATACGAGAAACCGATTCAGTTGGTGTTAAAGGAACCGATTAAGAGTATGGACCGTGTTGATGGTTTTGGTGGGGAGCCTGTGGTTGGGAGGAAAGAAGATGATTCACTGGATGATTTGTTTAGTGCATATATGAATTTGGACAACATTGATACTCTGAATTTTTCTGGTATGGAAGATAAAGATTTGGATAGCAGAACCAGTGGTTCCAAGACTGTTGAAAGCAGTGATAACGAAGTTGAGAGTCATGCGAATGGGAAAACAACTGGTGCTCAAGGGGCTAGTTCAAGCTGTTCTGAGGACAGAAGGGAAGGAGTTAAGAGGAGTTCTAATGGGGACATTGCACCGGGATCCCGGCACCGGAGAAGTTACTCGTTGGACAGCTCCATTGGAAATTTTCATATTGGAGATGAATCACCTAAGCTTCCTCCTCTGCAAAACCGGGGTGGTCAACACTCGCCTAGCAATTCACTAGAGGGTAAGACATCTGAAACAAGCATAGAGTTTGGAAATGGTGAATTCAGCTCGGAGGAGCTAAAGAAAATAAAGGAGAATGATAAACTTGCTGAAATTGCCATGGCTGATCCTAAACGTGCAAAAAGGATTTTGGCCAATAGGCTATCTGCTGCTCGCTCGAAAGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTGAAAGTCCAAACACTTCAGACAGAGACAACCACATTGTCTACTCAATTTACCAAATTACAGATGGACAATTCAGAGCTTAAAAGTGAGAACAATGAGTACAAATTGAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGCTCTGAATGAGACTTTGGATGCCGAAGTGCGGCGGTTGAGGCGCACGGTCGCAGACCTTGGCGGTGAGTCCCTCCTCTCGAGTCGAATGGCTCAACAGCTTGCTATTAGCCAACAAATGTTCCCGTTACAGCACCAGCAGCACCCTAACCAGCTTAGACATGGTCAACTGCACAACAGCCATTCCCAGGAACAAACACAGACTCAGTCACAGCGCCAGAATGGCAAAGCAACAGCCTACTGA 1659 0.4623 MEGVDQSNLKRNGSGFGSSSGANLRPPNRLNTAVPVSQLGVAENQKPYGIPPSHPNTNISPSSAYPQFFGSQSHSNSVSQRLGSPNLSSVSSHSRSLSQPSFFSLDSLPPLSPSPYREPSVSDPISLDLSAEESLVNPHAPLPNRGPALQLGHSLPPRKGHRRSSSDSPLGISDFIQSAPQSVPSRTWSDRDVSRGGNSGYEKPIQLVLKEPIKSMDRVDGFGGEPVVGRKEDDSLDDLFSAYMNLDNIDTLNFSGMEDKDLDSRTSGSKTVESSDNEVESHANGKTTGAQGASSSCSEDRREGVKRSSNGDIAPGSRHRRSYSLDSSIGNFHIGDESPKLPPLQNRGGQHSPSNSLEGKTSETSIEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSENNEYKLRIQALEQQSQLKDALNETLDAEVRRLRRTVADLGGESLLSSRMAQQLAISQQMFPLQHQQHPNQLRHGQLHNSHSQEQTQTQSQRQNGKATAY 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3931g00001 552 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 394 457 IPR004827 GO:0003700|GO:0006355
Vium3931g00001 552 Coils Coil 440 495 - -
Vium3931g00001 552 SUPERFAMILY Leucine zipper domain 396 451 IPR046347 GO:0003700|GO:0006355
Vium3931g00001 552 CDD bZIP_plant_RF2 397 469 IPR044759 GO:0003700|GO:0006355
Vium3931g00001 552 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 93 545 - -
Vium3931g00001 552 MobiDBLite consensus disorder prediction 50 108 - -
Vium3931g00001 552 MobiDBLite consensus disorder prediction 1 39 - -
Vium3931g00001 552 FunFam Transcription factor VIP1 isoform A 394 456 - -
Vium3931g00001 552 MobiDBLite consensus disorder prediction 1 206 - -
Vium3931g00001 552 Gene3D - 395 460 - -
Vium3931g00001 552 SMART brlzneu 392 456 IPR004827 GO:0003700|GO:0006355
Vium3931g00001 552 MobiDBLite consensus disorder prediction 281 298 - -
Vium3931g00001 552 MobiDBLite consensus disorder prediction 345 371 - -
Vium3931g00001 552 MobiDBLite consensus disorder prediction 253 371 - -
Vium3931g00001 552 Pfam bZIP transcription factor 396 454 IPR004827 GO:0003700|GO:0006355
Vium3931g00001 552 MobiDBLite consensus disorder prediction 166 194 - -
Vium3931g00001 552 Coils Coil 412 432 - -
Vium3931g00001 552 MobiDBLite consensus disorder prediction 515 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3931g00001 Vium-Chr3931 18455 25712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3931g00001 27 509 bZIP Transcription Factor Family AT4G38900 46.019 1.96e-104 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium3931g00001 bZIP_1 1.9e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3931g00001 - - gmx:100810841 853.973