Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium392g00024 ATGACCACAAAACCAAAGCCACACCATCTTTTCCTTCTCTTAATTCAGTTCTTAATTTCCACAAGAGTCAAAGCTGACTGTGATTCTGGTTGCAACCTTGCTCTAGCTTCCTACTACATACCGGAGGACACCAACCTCACATTCATCAGCAATCTTTTTGGAAAGCCCACATCGGAGATTCTCAAGTACAACCCAAGCGTCAAAGACTCCAACGTCATTCACAGCCAAACGCGGATCAACGTCCCGTTCTCCTGCGACTGCTTAAACGGGCAGTTTTTGGGGCACACTTTCTCCTACCGGATCCAACACGGGGACACCTACACGCTTGTTGCGGATACCACTTTCTCCAACCTCACAACCGAGGATTGGGTGAGAAGGGTCAACAGTTACCCGCCCAGTCATATTCCCGGCAACGTCAACATCAACGTCACCATCAACTGCTCCTGCGGAAACCGACACGTGTCCAAGCATTATGGGCTGTTTTTGACGTACCCGCTTCGGTTGGGTGATGACTTGCAAGGGGTTGGGGCGGAATCCGGTGTGCCGGCGGAGCTGCTGGCACGCTACAACCCCACCTCAAATTTCAGTTCTGGGAGTGGACTCGTGTTCGTGCCGGCTAAAGATGAAAATGGAAACTTTCCACCTATGAAGCTGAGATCAGTAGGAATATCTGGTGGAGCCATTGCTGGCATATCGGTTGGAGGAGCTGCTGGGGTCTTAATGTTGGCACTTGTTCTATATGTTGGACTACACAGAAGAAGAAAAGTGGCTGAGGTATCCCTTCTCACACTCCCAGGAGCCTCTGAAGATCACTGTAGTCCACTCTATCATGGTATTGGTTTGGGAAGCAGCTTGGACAAGGCATCGGAATCTTCTGTTGTTGCTTCTCCAAGGATGACAGGGATTACAGTGGACAAGTCAGTGGAGTTCTCATATGGGGAGCTAGACAAGGCCACTGATGGCTTTAGTGTGGCTAATATAATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGGAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTGCAGAACTCAAGGTTCTAACGCATGTCCATCACTTGAACCTGGTGCGGCTAATTGGATATTGTGTTGAGGGCTCCTTATTTCTGGTTTATGAGTATATTGAGAACGGCAATTTAAGCCAACATTTGCGAGGCTCAGGGAGGGATCCGTTAACATGGGGAGCTAGAGTGCAAATTGCTCTTGATGCAGCAAGAGGATTGGAATACATCCATGAGCATACAGTTCCTGTCTACATCCACAGAGATATTAAATCAGCAAACATCTTGATAGACAAAAACTTTCGTGCAAAGGTTGCAGATTTCGGTCTCACAAAATTGACTGAGTATGGTAGTTCTTCATTACACACGCGTCTTGTGGGTACCTTTGGTTATATGCCTCCAGAATATGCACAATATGGCGATGTTTCCTCGAAAGTAGACGTATATGCTTTCGGAGTTGTTCTATATGAACTCATCTCAGGCAAGGAAGCTATTGTCAAGACAAACGATCCTGAGGGTGAATCAAAAGGACTGGTCGCCTTGTTTGAAGAAGTTCTTGGTCTCTCAGATCCAAAAGAAGATCTTCGTCAACTTGTTGACCCTAGACTTGGTGATAACTACCCTCTTGACTCTGTATTTAAGGTGTCTCAGCTTGCGAAAGCATGTACACATGAAAACCCGCAACTTAGGCCAAGCATGAGATCAATTGTTGTTGCCTTAATGACACTTTCATCTGCAACTGAGGATTGGGATGTTGGTTCCTTCTATGAAAACCAAGCTTTAGTGCACCTTATGTCTGGAAGGTAG 1863 0.4622 MTTKPKPHHLFLLLIQFLISTRVKADCDSGCNLALASYYIPEDTNLTFISNLFGKPTSEILKYNPSVKDSNVIHSQTRINVPFSCDCLNGQFLGHTFSYRIQHGDTYTLVADTTFSNLTTEDWVRRVNSYPPSHIPGNVNINVTINCSCGNRHVSKHYGLFLTYPLRLGDDLQGVGAESGVPAELLARYNPTSNFSSGSGLVFVPAKDENGNFPPMKLRSVGISGGAIAGISVGGAAGVLMLALVLYVGLHRRRKVAEVSLLTLPGASEDHCSPLYHGIGLGSSLDKASESSVVASPRMTGITVDKSVEFSYGELDKATDGFSVANIIGQGGFGSVYYAELRNEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLTWGARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTKLTEYGSSSLHTRLVGTFGYMPPEYAQYGDVSSKVDVYAFGVVLYELISGKEAIVKTNDPEGESKGLVALFEEVLGLSDPKEDLRQLVDPRLGDNYPLDSVFKVSQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium392g00024 620 FunFam LysM receptor kinase 2 301 392 - -
Vium392g00024 620 ProSiteProfiles Protein kinase domain profile. 322 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium392g00024 620 SMART serkin_6 322 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium392g00024 620 CDD STKc_IRAK 328 589 - -
Vium392g00024 620 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Vium392g00024 620 FunFam PTI1-like tyrosine-protein kinase 3 393 606 - -
Vium392g00024 620 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 606 IPR044812 GO:0019199|GO:0045087
Vium392g00024 620 SUPERFAMILY Protein kinase-like (PK-like) 302 592 IPR011009 -
Vium392g00024 620 Pfam Protein tyrosine and serine/threonine kinase 325 591 IPR001245 GO:0004672|GO:0006468
Vium392g00024 620 Gene3D Phosphorylase Kinase; domain 1 303 392 - -
Vium392g00024 620 Gene3D Transferase(Phosphotransferase) domain 1 393 604 - -
Vium392g00024 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium392g00024 Vium-Chr392 155692 161349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium392g00024 12 620 Receptor kinase-like Gene Family AT3G21630 55.574 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium392g00024 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium392g00024 - K13429 gmx:100802308 1055.43