Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium392g00023 ATGAGTGATGCATTCATGGTTAATCATGAGAATGAGACAAAAGAAGTCAAAGGATCATACTGGAGTATAAGACCAAGTTTCTCAAATCCTACAAAATCCTCTGGGATTCGGAAGAGATCAAATGAGCAATACTTATCTAAGTTTCCAAAATCAGGAGAAATCCCAAGATGCTCAAGAGGTTTTGGAAGTTCAAGTACGGAAAGGATGCAGAGACAACTTTTAAAAAGTGTCATCAGTGTAGGAAAAAGGAAAGAAACAGCATTCGTACCTTGTACTAAATGTCCGAAAAAGTTTGTTTGTGGTGCATCAAGAGATGTGAGAATGAGACAAAAGAAGTCAAAGGATCATACTGAGTATAAGACCAAGTTCTCAAATCCTACAAAATCCTCTGGGATTCGGAAGAGATCAAATGAGCAATACTTATCTAAGTTTCCAAAATCAGGAGAAATCCCAAGATGCTCAAGAGGTTTTGGAAGTTCAAGTACGGGAAAGGATGCAGAGACAACTTTTAAAAAGTGTCATCAGTGTAGGAAAAAGGAAAGAACAGCATTCGTACCTTGTACTAAATGTCCGAAAATGTATTGTTTGTGGTGCATCAAGAGATGGTATCCCAATCTTACAGTATCAGACATTTCACACGAGTGTCCCTTTTGCCGAAACAATTGCAATTGCAGTGTTTGCTTACGCTCAAGAGGAACCATTAAGACATCTAACAGCAGCATCACAGACGTGGAAAGGGTTCAGCATCTCCAATACATGATTAACTTACTCATTCCATTTATACAACACATTTGTGAAGAACAAAGTCAAGAGCTCGAGATTGAAGCTAAAATACAAGAAAAATCAAGTGCTGCTGAGATTGAGATACCACAAACATCTTGTGAGAATGAACGTATTTATTGTGACCATTGTGCTGTTTCATTTACTGATCTTTATCGAAGCTGCCCCGAGTGTTCCTTTGAAATCTGCCTTAACTGTTGCAGAGAAATACGCAATGGAAGTATATCACCCCGGTGTAATATGAAGTTTCAGTATGTGAATAGGGGGTGTGATTATATGCATGGTGGTGATCCATTACCAATGTGTAGTAATTTTGGGATTTTAAGAGGTCATTCTAAGATATTTAGCAAATGGGAAGCCAACAGTGATGGAAGTATTAGATGTGCACCAAAAGAAATGGGGGGCTGTGGTGGCCCTGTGATGGAGCTGAAGCGTATTTTTTCAAATGGGTGGATATCAGAATTGGAAGCCAAAGCTCGTAACATGCTGAAAGGCTTTTCCAAAACTGATAAAACAGTTCTTCAGAAAGAAGGAATATCAGGTTGCAATTCTAAGATAAGAGCAGCTTTTAGAGATGGACTGCTTCTCTTCCAACAACATTGGACTCAAGGGGAACCAATCATAGTTCGTGATGTTCTTAAGCAGGGTACAGGTCTTAGTTGGGAGCCAATGGTCACATTGCGAGCCCTATGTGAAAACGCGGTTCCAGGAATCAGCTCAAATACTACTGAATTGAAGGCCATTGATTGTCTTTCTTGTTGTGAGGTAGAAATCAATGCTCGTACATTCTTCAAGGGTTATACCCAAGGAAGAGCATATGAAAATCTCTGGCCCGAGATGCTGAAGTTAAAAGACTGGCCTCCCTCTGACAAGTTTGATGATCTTTTGCCTCGCCATTGTGACGAGTTTATCCGCTGCTTGCCATTTCAAGAGTATTGTGATCCTCGAGTTGGGATACTCAACCTTGCTGTAAAGTTGCCATCTCATGTTCTAAAGCCAGACCTTGGTCCAAAAACATATATTGCTTATGGGATTAAAGAGGAACTTGGCAGGGGAGATTCAGTAACAAAACTTCACTGTGATATGTCTGATGCTGTGAATATTTTGATCCACACGACTGAGGTAACATTGAGTGATGAACAAAATTCTGTTATTCCAAAACTGAAAAAAGCACACATTGCCCAAGATGAGAAAGAGGGACGTGCTCGAGAAAGGGTCGATGAACGGTTGAATGAAGGACTTTGCAAAGACAACAGAGAAGAATATAAGAGTGCTGTTTCTAAAGAATCAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAGAAGCATATCTAAGAAAGCACTCTAAAGAATTTAGGCATACTTATTGCTCTGGAGTTGAAGAGGTTGTCCATCCAATTCATGACCAATGCTTTTACCTGACTTTGGAACACAAGAAGAATCTGAAGAAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAACAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTGCGCACCAAGTCAGGAATCTTAAGTCATGCACAAAAGTTGCTGTAGATTTTGTGTCCCCAGAAAATGTTCATATGTGCCTGCATTTAACTGAAGAGTTCCGTTGTCTTCCCAAGAATCACAAGGCCAGAGAAGATAAACTTGAGGTGAGATCAAATTGA 2475 0.4016 MSDAFMVNHENETKEVKGSYWSIRPSFSNPTKSSGIRKRSNEQYLSKFPKSGEIPRCSRGFGSSSTERMQRQLLKSVISVGKRKETAFVPCTKCPKKFVCGASRDVRMRQKKSKDHTEYKTKFSNPTKSSGIRKRSNEQYLSKFPKSGEIPRCSRGFGSSSTGKDAETTFKKCHQCRKKERTAFVPCTKCPKMYCLWCIKRWYPNLTVSDISHECPFCRNNCNCSVCLRSRGTIKTSNSSITDVERVQHLQYMINLLIPFIQHICEEQSQELEIEAKIQEKSSAAEIEIPQTSCENERIYCDHCAVSFTDLYRSCPECSFEICLNCCREIRNGSISPRCNMKFQYVNRGCDYMHGGDPLPMCSNFGILRGHSKIFSKWEANSDGSIRCAPKEMGGCGGPVMELKRIFSNGWISELEAKARNMLKGFSKTDKTVLQKEGISGCNSKIRAAFRDGLLLFQQHWTQGEPIIVRDVLKQGTGLSWEPMVTLRALCENAVPGISSNTTELKAIDCLSCCEVEINARTFFKGYTQGRAYENLWPEMLKLKDWPPSDKFDDLLPRHCDEFIRCLPFQEYCDPRVGILNLAVKLPSHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILIHTTEVTLSDEQNSVIPKLKKAHIAQDEKEGRARERVDERLNEGLCKDNREEYKSAVSKESGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCSGVEEVVHPIHDQCFYLTLEHKKNLKKEFGVEPWTFEQQLGEAVFIPAGCAHQVRNLKSCTKVAVDFVSPENVHMCLHLTEEFRCLPKNHKAREDKLEVRSN 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium392g00023 824 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 170 238 IPR018866 -
Vium392g00023 824 Gene3D Cupin 446 815 - -
Vium392g00023 824 SUPERFAMILY Clavaminate synthase-like 458 820 - -
Vium392g00023 824 ProSiteProfiles JmjC domain profile. 575 806 IPR003347 -
Vium392g00023 824 FunFam Transcription factor jumonji domain-containing protein 442 815 - -
Vium392g00023 824 ProSiteProfiles Zinc finger RING-type profile. 173 219 IPR001841 -
Vium392g00023 824 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 451 822 IPR045109 GO:0032454|GO:0033169
Vium392g00023 824 SMART cupin_9 556 806 IPR003347 -
Vium392g00023 824 MobiDBLite consensus disorder prediction 109 136 - -
Vium392g00023 824 Pfam JmjC domain, hydroxylase 691 789 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium392g00023 Vium-Chr392 144937 150868 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium392g00023 JmjC 8.5e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium392g00023 K15601 K21989 gmx:100801772 1106.66