Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium392g00022 ATGAGACAAAAGAAGTCAAAGGATCATACTGAGTATAAGACCAAGTTCTCAAATCCTACAAAATCCTCTGGGATTCGGAAGAGATCAAATGAGCAATACTTATCTAAGTTTCCAAAATCAGGAGAAATCCCAAGATGCTCAAGAGGTTTTGGAAGTTCAAGTACGGGAAAGGATGCAGAGACAACTTTTAAAAAGTGTCATCAGTGTAGGAAAAAGGAAAGAACAGCATTCGTACCTTGTACTAAATGTCCGAAAATGTATTGTTTGTGGTGCATCAAGAGATGGTATCCCAATCTTACAGTATCAGACATTTCACACGAGTGTCCCTTTTGCCGAAACAATTGCAATTGCAGTGTTTGCTTACGCTCAAGAGGAACCATTAAGACATCTAACAGCAGCATCACAGACGTGGAAAGGGTTCAGCATCTCCAATACATGATTAACTTACTCATTCCATTTATACAACACATTTGTGAAGAACAAAGTCAAGAGCTCGAGATTGAAGCTAAAATACAAGAAAAATCAAGTGCTGCTGAGATTGAGATACCACAAACATCTTGTGAGAATGAACGTATTTATTGTGACCATTGTGCTGTTTCATTTACTGATCTTTATCGAAGCTGCCCCGAGTGTTCCTTTGAAATCTGCCTTAACTGTTGCATAGAAATACGCAATGGAAGTATATCACCCCGGTGTAATATGAAGTTTCAGTATGTGAATAGGGGGTGTGATTATATGCATGGTGGTGATCCATTACCAATGTGTAGTAATTTTGGGATTTTAAGAGGTCATTCTAAGATATTTAGCAAATGGGAAGCCAACAGTGATGGAAGTATTAGATGTGCACCAAAAGAAATGGGGGGCTGTGGTGGCCCTGTGATGGAGCTGAAGCGTATTTTTTCAAATGGGTGGATATCAGAATTGGAAGCCAAAGCTCGTAACATGCTTAAAGGCTTTTCCAAAACTGATAAAACAGTTCTTCAGAAAGAAGGAATATCAGGTTGCAATTCTAAGATAAGAGCAGCTTTTAGAGATGGACTGCTTCTCTTCCAACAACATTGGACTCAAGGGGAACCAATCATAGTTCGTGATGTTCTTAAGCAGGGTACAGGTCTTAGTTGGGAGCCAATGGTCACATTGCGAGCCCTATGTGAAAACGCGGTTCCAGGAATCAGCTCAAATACTACTGAATTGAAGGCCATTGATTGTCTTTCTTGTTGTGAGGTAGAAATCAATGCTCGTACATTCTTCAAGGGTTATACCCAAGGAAGAGCATATGAAAATCTCTGGCCCGAGATGCTGAAGTTAAAAGACTGGCCTCCCTCTGACAAGTTTGATGATCTTTTGCCTCGCCATTGTGACGAGTTTATCCGCTGCTTGCCATTTCAAGAGTATTGTGATCCTCGAGTTGGGATACTCAACCTTGCTGTAAAGTTGCCATCTCATGTTCTAAAGCCAGACCTTGGTCCAAAAACATATATTGCTTATGGGATTAAAGAGGAACTTGGCAGGGGAGATTCAGTAACAAAACTTCACTGTGATATGTCTGATGCTGTGAATATTTTGATCCACACGACTGAGGTAACATTGAGTGATGAACAAAATTCTGTTATTCCAAAACTGAAAAAAGCACACATTGCCCAAGATGAGAAAGAGGGACGTGCTCGAGAAAGGGTCGATGAACGGTTGAATGAAGGACTTTGCAAAGACAACAGAGAAGAATATAAGAGTGCTGTTTCTAAAGAATCAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAGAAGCATATCTAAGAAAGCACTCTAAAGAATTTAGGCATACTTATTGCTCTGGAGTTGAAGAGGTTGTCCATCCAATTCATGACCAATGCTTTTACCTGACTTTGGAACACAAGAAGAATCTGAAGAAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAACAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTGCGCACCAAGTCAGGAATCTTAAGTCATGCACAAAAGTTGCTGTAGATTTTGTGTCCCCAGAAAATGTTCATATGTGCCTGCATTTAACTGAAGAGTTCCGTTGTCTTCCCAAGAATCACAAGGCCAGAGAAGATAAACTTGAGATGCAGAAAATGATAGTCTATGCAGTTGACAGTGCTGTCAAAGAATTAGAAGCTTTACGTTCTTGA 2205 0.4041 MRQKKSKDHTEYKTKFSNPTKSSGIRKRSNEQYLSKFPKSGEIPRCSRGFGSSSTGKDAETTFKKCHQCRKKERTAFVPCTKCPKMYCLWCIKRWYPNLTVSDISHECPFCRNNCNCSVCLRSRGTIKTSNSSITDVERVQHLQYMINLLIPFIQHICEEQSQELEIEAKIQEKSSAAEIEIPQTSCENERIYCDHCAVSFTDLYRSCPECSFEICLNCCIEIRNGSISPRCNMKFQYVNRGCDYMHGGDPLPMCSNFGILRGHSKIFSKWEANSDGSIRCAPKEMGGCGGPVMELKRIFSNGWISELEAKARNMLKGFSKTDKTVLQKEGISGCNSKIRAAFRDGLLLFQQHWTQGEPIIVRDVLKQGTGLSWEPMVTLRALCENAVPGISSNTTELKAIDCLSCCEVEINARTFFKGYTQGRAYENLWPEMLKLKDWPPSDKFDDLLPRHCDEFIRCLPFQEYCDPRVGILNLAVKLPSHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILIHTTEVTLSDEQNSVIPKLKKAHIAQDEKEGRARERVDERLNEGLCKDNREEYKSAVSKESGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCSGVEEVVHPIHDQCFYLTLEHKKNLKKEFGVEPWTFEQQLGEAVFIPAGCAHQVRNLKSCTKVAVDFVSPENVHMCLHLTEEFRCLPKNHKAREDKLEMQKMIVYAVDSAVKELEALRS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium392g00022 734 ProSiteProfiles JmjC domain profile. 468 699 IPR003347 -
Vium392g00022 734 MobiDBLite consensus disorder prediction 1 15 - -
Vium392g00022 734 Coils Coil 722 734 - -
Vium392g00022 734 ProSiteProfiles Zinc finger RING-type profile. 66 112 IPR001841 -
Vium392g00022 734 SMART cupin_9 449 699 IPR003347 -
Vium392g00022 734 SUPERFAMILY Clavaminate synthase-like 351 732 - -
Vium392g00022 734 Pfam JmjC domain, hydroxylase 584 682 IPR003347 -
Vium392g00022 734 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 63 131 IPR018866 -
Vium392g00022 734 FunFam Transcription factor jumonji domain-containing protein 335 708 - -
Vium392g00022 734 MobiDBLite consensus disorder prediction 1 28 - -
Vium392g00022 734 Gene3D Cupin 339 708 - -
Vium392g00022 734 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 342 733 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium392g00022 Vium-Chr392 139562 143224 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium392g00022 JmjC 7.2e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium392g00022 K15601 K21989 gmx:100801772 1130.93