Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium392g00010 ATGGCCACCTCTTCCTTATTCCTCTTGCTTTCATGCTTCATACTAAACCTTGCATCTTCATCACAAGCTGCAGTCCTGAACAAGATAGACTCATGCAGGCTTGCCAAATCCAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCCATTGGCTTTGGAAGTGATGCCATTGGAGGCAAATATGGAGCAATATATCAAGTCACAGATCCCTCTGATGATCCCATAAAACCAAAAGCAGGCACACTTCGTCATGCTGTGGTCCAAACACAACCCCTTTGGATCATTTTTGCCAAAGATATGACTATTCAGCTCAAGAACGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTGCTAATGGCCCCTGCATTACAATACAAGGTGTTAGCCATGTTATCATACATGGAATTAGCATCCATGATTGCAGACCAGGCAAAGCTGGTCTTGTAATGAGCACCACGTCTCATGTTGGTCATCGCCGTGGCTCTGATGGAGATGCCATTAGCATATTTGCCTCCTCAAATGTTTGGATTGATCACTGTTTTTTGGCTCGTTGTGTTGATGGCTTGATTGACGTTATTCGTGCCTCAACTGCGATTACCATTTCTAACAATTACTTTACCCAGCATGACAAAGTTATGCTGCTAGGACACAGCGATGAATACACAGCAGATAAAATAATGAAAGTAACAATTGCCTTCAACCGATTTGGTAGTGGTCTAATTGAGAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCCATAGGGGGGAGTTCTAACCCAACCATTCTAAGTGAAGCAAACTACTATGTAGCTCCGAATAACCCTGCTTCAAAACAGGTTACCAAAAGGGAAATGAAGGGAAAATTGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCCTAAACGGTGCTTATTTTGTTCCATCAGGCTATGGAAGTTGTGACCCAAACTATTCACCTTCTCAATCTTTTACCGCTGCACCTGCTTCATTGGTGCCTTCTATAACTCTAAACGCAGGTCCCCTAACTTGTGTTGTTGGTAAACCGTGCTAG 1122 0.4332 MATSSLFLLLSCFILNLASSSQAAVLNKIDSCRLAKSNWASNRQALADCAIGFGSDAIGGKYGAIYQVTDPSDDPIKPKAGTLRHAVVQTQPLWIIFAKDMTIQLKNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCRPGKAGLVMSTTSHVGHRRGSDGDAISIFASSNVWIDHCFLARCVDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDEYTADKIMKVTIAFNRFGSGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEANYYVAPNNPASKQVTKREMKGKLKSWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPSQSFTAAPASLVPSITLNAGPLTCVVGKPC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium392g00010 373 Gene3D - 26 366 IPR012334 -
Vium392g00010 373 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Vium392g00010 373 PRINTS Pollen allergen Amb family signature 172 193 IPR018082 -
Vium392g00010 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Vium392g00010 373 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Vium392g00010 373 PRINTS Pollen allergen Amb family signature 72 97 IPR018082 -
Vium392g00010 373 PRINTS Pollen allergen Amb family signature 49 66 IPR018082 -
Vium392g00010 373 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Vium392g00010 373 PRINTS Pollen allergen Amb family signature 314 338 IPR018082 -
Vium392g00010 373 SMART amb_all 100 297 IPR002022 -
Vium392g00010 373 Pfam Pectate lyase 106 291 IPR002022 -
Vium392g00010 373 PANTHER PECTATE LYASE 18-RELATED 24 371 IPR045032 GO:0030570
Vium392g00010 373 SUPERFAMILY Pectin lyase-like 27 364 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium392g00010 Vium-Chr392 91202 92871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium392g00010 4 373 Polysaccharide Lyase AT1G11920 65.535 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium392g00010 K01728 - gmx:100799106 674.47