Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium392g00008 ATGGACAAAGGATGGGGACTCACCCTTGACACCTCTTCCTCGCAATCTCTCTCATCATTCCCTTCCAAACAGCCTTCCACTTCTTTCTCCAAACTCACCAGCGACACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGTCCCGCTGCCAAGGACGACGAACACAACCGCAAAGTCGTCGGTGAAGTCGACTTCTTCTCTGATAGAATCACCAAACCAACCTCCCCACCCTCCCACGACCAACACGTTAAACCCAACATCGTCAAGAAGGAAATTGTTGAAACACCTCTCCACGTTAATACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCGACCGTCGATGATGGGGTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGCTTGCACAGATGCAAGTGGAGCTTCAACGCATGAACGAAGAGAACAAGAAGCTGAAAGAGATGCTGAGCCATGTTACCGGTAACTACACGGCCTTGCAGATGCATCTCATGACATTAATGCATCAGAACCAGCGCACTGAGAACACAGAAAATGAGGTTGTTCAGGGAAAGGCGGATGATAAAAATCATGCTGTTGGTGGTGGAAAGGTTCCAAGACAGTTCCTTGATATAGGTCCCAGTGGCGCAGCCGAAGCAGATGACCAAGTGTCTGACTCTTCCTCCGATGAGAGAACACGATCGAGCACACCTCAGAACAATAACATTGAAGTTGGAACAAGAGACGGTGTGAGAAATGTTAATGCCAAAAGAGAGTTGGGTAGGGAAGAGAGCCCAGAGTCAGAATCCCAAGGTTGGGGTCCTAATAAGCTTCAGAAAGTTAACCCTTCCAGTGCTATCGATCAGTCCACTACAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCTCGATCAGAAGCTCCCATGATAAGCGATGGCTGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGGAACCCATGTCCTCGAGCATATTATAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACGATTTTGGTTACAACTTATGAAGGTACACATAACCATCCACTGCCACCTGCCGCTATGGCCATGGCGTCAACCACTACAGCTGCTGCTAGCATGTTACTGTCAGGGTCAATGTCCAGTGCAGATGGAATTATGAACCCCAATTTGCTTGCCAGAGCAATCATTCCTTGCAATTCTAGCATGGCAACTCTTTCAGCTTCGGCACCATTTCCAACTGTGACTTTGGACCTCACGCATAACCCGAACCCGTTGCAATTTCAGAGACCAGCTACCCCATTCCAAGTGCCCTTCCTCCAAGGGCAGCCTCAGAACTTTGGATCCGTAGCCACCCCAATTGCGCAAGCACAAACACTTTATAATCAATCAAAATTCTCTGGTCTTCAACTATCTCAGGAAGTAGGTTCTTCCCAGTTGGCTGCACAAGCTTCTAGACCACCCTTACAGTCTAGCCAGCAACCCTCGTCGGCTGATACAGTCAGTGCCGCCGCGGCCGCTATCACCTCCAATCCAAACTTCACCGCCGTCCTCGCCGCTGCAATCTCCTCTATCATAGGCGGTTCTCATAATGCAAACAATAACACCAATAACAACAACAACAGCACAAGCAGGACTACCATCAGCAGCTTTTCAGGAAACTGA 1713 0.4898 MDKGWGLTLDTSSSQSLSSFPSKQPSTSFSKLTSDTMFPLLGFPVNLSRPAAKDDEHNRKVVGEVDFFSDRITKPTSPPSHDQHVKPNIVKKEIVETPLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQMQVELQRMNEENKKLKEMLSHVTGNYTALQMHLMTLMHQNQRTENTENEVVQGKADDKNHAVGGGKVPRQFLDIGPSGAAEADDQVSDSSSDERTRSSTPQNNNIEVGTRDGVRNVNAKRELGREESPESESQGWGPNKLQKVNPSSAIDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAIIPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRPATPFQVPFLQGQPQNFGSVATPIAQAQTLYNQSKFSGLQLSQEVGSSQLAAQASRPPLQSSQQPSSADTVSAAAAAITSNPNFTAVLAAAISSIIGGSHNANNNTNNNNNSTSRTTISSFSGN 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium392g00008 570 MobiDBLite consensus disorder prediction 252 267 - -
Vium392g00008 570 MobiDBLite consensus disorder prediction 547 570 - -
Vium392g00008 570 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium392g00008 570 FunFam probable WRKY transcription factor 31 298 375 - -
Vium392g00008 570 SMART WRKY_cls 313 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium392g00008 570 Gene3D WRKY domain 298 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium392g00008 570 MobiDBLite consensus disorder prediction 112 132 - -
Vium392g00008 570 Coils Coil 130 164 - -
Vium392g00008 570 MobiDBLite consensus disorder prediction 231 249 - -
Vium392g00008 570 MobiDBLite consensus disorder prediction 196 301 - -
Vium392g00008 570 SUPERFAMILY WRKY DNA-binding domain 306 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium392g00008 570 MobiDBLite consensus disorder prediction 7 28 - -
Vium392g00008 570 Pfam WRKY DNA -binding domain 315 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium392g00008 570 MobiDBLite consensus disorder prediction 1 28 - -
Vium392g00008 570 MobiDBLite consensus disorder prediction 270 298 - -
Vium392g00008 570 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 109 557 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium392g00008 Vium-Chr392 73537 76307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium392g00008 1 556 WRKY Transcription Factor Family AT1G62300 51.410 2.05e-159 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium392g00008 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium392g00008 - - pvu:PHAVU_006G147800g 977.237