Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium392g00006 ATGGACTGGACTCGAGGCCACATGCTCGGCCGTGGTTCCACCGCGGCCGTCTACTTCGCCGAGTCCCGCCGATCCGGTCGAGTCTTTGCCGTCAAGTCTGCAGAGCTACACCGGTCGGAATTCCTCCAAAGGGAGGAGATGATTCTTTCCACTCTCAGGTGTCCTCATATTGTTGCCTACCAAGGTTTTGACACCACGTTTGAGAACGGTGTTTACTGGTTCAACATGTTCATGGAATACGCGCCTCATGGGACGCTGGCGGAGCGCGGTGGTGGCATGGAAGAAGCGTTGGTGGGATCCTATACCCGCCAAATTCTGCAGGGGCTGCACTACCTCCACTCCAGTGGGATAGTGCATTGCGATGTGAAGGGGCAGAATGTGTTGGTGACGGAGAAGGGGGTGAAAATTGCGGACTTGGGCTGTGCTCGGAGGGTGGGGGAGGTGTCCGTCATCGCCGGCACGCCGGCGTTCATGTCTCCTGAGGTAGCGCGTGGGGAGCAGCAGGGTTTCCCTGCTGACGTGTGGGCTCTGGGGTGCACAGTGCTGGAGATGATCACCGGGAAGCCACCATGGCACGGCGTCGGCGACCCGGCGGGAGTGGTTTACAGGATCGGATTCTCCGATGAGTTGCCTGAGATTCCTAGCTGTGTGTCAGAGCAGGGGAGGGACTTTTTGGGAAAGTGTTTGAAGAGGGACCCGAATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAATGCACGGAATTGAAGTTGCTTTTGTTGGATTCAGACACTCCCACTGGTGTGTTGGAACGAGGATTTTGGGATTCCTTGGAGACAACCGAGCATGGAGCACGTGATTGTCCCTCTCCTACGGACAGAATTCGTAGTTTGTTTTCGGATGAACCCCTTTGGATATGGAAAAACGATGATGATAATGATGATGAGCAATGGGTGACGGTGAGGAGCAATGAGTTCCATGAAGAATTATCCTTTCACAAAACAGAGACTACTTTTAATATGGTTAGTGATGAGGAAACCGGATTGGTTACTTTATGTGAACCTAAAATTGTAGTTGAATTGAGTAGATGGAATGCTATCACTTGTGATGATTGTTATCTTAGAGGCAGAAACTGTGATTGTCGCTTCAGAGAATCATTATTGTCAGTTTGTGTGTGTGTAGTGATTGTTCTCCATGGAAAATTCGATTCTCCTCAGATGGAAATTTTTATTTTTATCATGCATTGCTTTCTGTTACTGTTCTCTCTGTCTCTCTCTGATTCAACGCTTTTCATTTTTATCACTATAATATAA 1308 0.4985 MDWTRGHMLGRGSTAAVYFAESRRSGRVFAVKSAELHRSEFLQREEMILSTLRCPHIVAYQGFDTTFENGVYWFNMFMEYAPHGTLAERGGGMEEALVGSYTRQILQGLHYLHSSGIVHCDVKGQNVLVTEKGVKIADLGCARRVGEVSVIAGTPAFMSPEVARGEQQGFPADVWALGCTVLEMITGKPPWHGVGDPAGVVYRIGFSDELPEIPSCVSEQGRDFLGKCLKRDPNERWSVEELLGHGFVKECTELKLLLLDSDTPTGVLERGFWDSLETTEHGARDCPSPTDRIRSLFSDEPLWIWKNDDDNDDEQWVTVRSNEFHEELSFHKTETTFNMVSDEETGLVTLCEPKIVVELSRWNAITCDDCYLRGRNCDCRFRESLLSVCVCVVIVLHGKFDSPQMEIFIFIMHCFLLLFSLSLSDSTLFIFITII 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium392g00006 435 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vium392g00006 435 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium392g00006 435 SUPERFAMILY Protein kinase-like (PK-like) 2 276 IPR011009 -
Vium392g00006 435 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium392g00006 435 CDD STKc_MAPKKK 2 248 - -
Vium392g00006 435 Pfam Protein kinase domain 5 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium392g00006 435 Gene3D Transferase(Phosphotransferase) domain 1 2 276 - -
Vium392g00006 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vium392g00006 435 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium392g00006 Vium-Chr392 34785 36423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium392g00006 1 276 MAP Kinase Kinase Kinase AT2G32510 53.793 1.34e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium392g00006 Pkinase 9.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium392g00006 K20716 - gmx:100802174 647.506