LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3929g00001	ATGGCTGCGACAAAACCCCAACGCACTCCACAGGAAGTGGAGGACATTATCATCCGCAAAATCTTCCTCGTCTCCATAACAGAAATCGAGAAGACAAGCGCAACGGATTCAAGAATCGTGTATTTGGAACTAACAGCTGCGGAGATTCTCAGCGAAGGGAAGGAGCTTCGCCTCTCTCGGGATTCAATGGAGAGGGTTTTGATTGACCGTCTCTCCGGAGACTTTTCTTCCACCACCGGTGAAGCCAGTGAGACACCGTTCCAGTACCTCATCGGATGCTACCACCGGGCGCACGAGGAGGGGAAGAAAATTGCGAACATGAAGGACAAGAGCTTGCGCTCGGAGATGGAGGCGGTGGTGAGGCAGGCTAAGAAGCTCTGTGTCAACTACTGCCGGATTCATTTAGCCAATCCCGAGCTCTTTCCGAGCCGGAATTCGGCGGGTACCGACGCCAAATCGCCGCTACTGCCGCTGATTTTTGCGGAGGTAGGCGGCGGAAGCGTGTTCGGGGGCGGCGGTGGCGGGGTCAAGAGTCCGCCGGGGTTTCTGGAGGAGCTTTTCAGGGACCCGGACTTTGACAGCTTGGACCTGATTCTGAAGGGGTTGTATGAAGAGTTGAGAGGGAGCGTTATGAATGTGTCTGCTCTGGGGAATTTTCAGGATTCTCTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCTTTGGTGCCAAGTCACTTGTGAATCACGAGTGGTGGATTCCCAAAGGGGTTTATGTGAATGGCCGTGCTATTGAAATGACCAGCATTTTGGGTCCCTTTTTCCACATTAGTGCTCTTCCTGATCAGGCGTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCAGCTGATTTGTTATCTTCATTTTCGACTATTAAAACTGTCATGAACAACTTATATGATGGGCTGGCTGAAGTTATGCTCATCCTTCTTAAAAGTACAGATACTCGTGAAAGAGTACTTGAGTATCTTGCGGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCACCTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTACATTACTCAAATCGCTTGAAGATAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTGCTGAATGGCTTAATAGTAAAAACCCAGCTAAGACTGGGGCAACCAGTCAATAA	1302	0.4816	MAATKPQRTPQEVEDIIIRKIFLVSITEIEKTSATDSRIVYLELTAAEILSEGKELRLSRDSMERVLIDRLSGDFSSTTGEASETPFQYLIGCYHRAHEEGKKIANMKDKSLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRNSAGTDAKSPLLPLIFAEVGGGSVFGGGGGGVKSPPGFLEELFRDPDFDSLDLILKGLYEELRGSVMNVSALGNFQDSLRALLYLVRFPFGAKSLVNHEWWIPKGVYVNGRAIEMTSILGPFFHISALPDQAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVMLILLKSTDTRERVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKISGLTALHASSEEVAEWLNSKNPAKTGATSQ	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3929g00001	433	PANTHER	UBIQUITINATION FACTOR E4	4	427	IPR045132	GO:0000151\|GO:0030433\|GO:0034450
	Vium3929g00001	433	Pfam	Ubiquitin elongating factor core	263	426	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3929g00001	1	420	U-box Gene Family	AT5G15400	70.000	0.0	613

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3929g00001	K10597		-	vum:124836195	828.935