Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3920g00005 ATGGCTGATATACAGCCGCCGCCGAACACCGCCGCAGCAAACGTCGCCGCTTCCGTTCCTTCAAAGGAGCATCTCCGCACAAGATGCTGCTACTGTCTCTGCAAAACCTTGTGGATCTTACTGGTCCTCGTTATCGTCCTCGTCATGCTCGTGATTTTGGTTTTCTACATCATCATCACACCCCGCTCCTTCAGATTCCACGTCACTGACACTACCCTCACACAATTCGATTACGCTGCCAACTCCACCCTTCGCTACAACCTCGTACTCAACATCACAGCAAGCAACCCTAACAAGAAGCTCAAGATCTACTACGACGTCGTTCAGGCCAACGCGTTCTACGGCGGCGTTAGGTTTTCCACCACCGACATCAACATGCCTTGGAATTCCTACCTTCAGGACAAGAAGGGCACCAACCTTTTCAGCGCCGTTTTCTCGGGACAACATGTGATGGTGTTCGATCGAAACCAGGTTTCTGACTTCCATGAAGATACCAATGATGGGGTGTTCCCTATAGATGTTATGATTCGTTTCACCATTAGGTTCAGGCTTGAAGCTTTTCAGTTTGGGTATTACTATCCTAGAGGCATGTGTGAACTCAAAGTTCCTTTGACTTCTAAGGGGGAAAAGGTGGTTCCGTTTAAGGTCACCAAGTGTCGAATTGATTTCTGA 672 0.4866 MADIQPPPNTAAANVAASVPSKEHLRTRCCYCLCKTLWILLVLVIVLVMLVILVFYIIITPRSFRFHVTDTTLTQFDYAANSTLRYNLVLNITASNPNKKLKIYYDVVQANAFYGGVRFSTTDINMPWNSYLQDKKGTNLFSAVFSGQHVMVFDRNQVSDFHEDTNDGVFPIDVMIRFTIRFRLEAFQFGYYYPRGMCELKVPLTSKGEKVVPFKVTKCRIDF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3920g00005 223 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 14 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3920g00005 Vium-Chr3920 86606 87685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3920g00005 58 205 SNARE and Associated Proteins AT1G32270 30.667 1.06e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3920g00005 - - ccaj:109813660 271.937