Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3920g00004 ATGGCCGAAACACAACCTCAACCGAACATCCCCGCAACCAACGACGTCGTATCGGCTCCTACAAAGGAGCACCTCGGAACAAGATGCGGCTATTGTCTCTGCAAAACCTTCTGGATTTTTCTGGTCCTCGTTATCATTCTCGTTATGCTTGTGATTTTGGTCTTATACATCATCATCACACCCCGCTCCTTCAGATTCCACGTCACCGACGCCAAGCTCACGCAATTCGACTACGCCGCCAACACATCCACCCTCAACTACAACCTCATACTCAACATCACAGCACGCAACCCGAACAAGAAGCTCAAGATCTACTACGACATCGTTCGGGCCAACGCGCTCTACGACGGCGTTAGGTTTTCCACCACCGACGTCAACATGCCCTGGAATTCCTACCTTCAGGACAAGAAGGGCACCAACCTTTTCAGCGCCGTTTTCTCGGGACAACATGTGATGGTGTTCGATCGAAACCAGGTTTCTGACTTCCATGAAGATACCAATGATGGGGTGTTCCCTATTGATATAAAAATCAAGTTTCGTATCAGGTTCAGGCTTGGGGATTATATTTCTGGGCACTTCAATGCCAGAGCCACGTGCGAGCTCAACGTTCCTTTCACTGATTCCAATGGGAAAACGGTGGCTGCGACTGCGTTTGACTCGACCAAGTGCCAAGTCGATTTCTGA 684 0.4971 MAETQPQPNIPATNDVVSAPTKEHLGTRCGYCLCKTFWIFLVLVIILVMLVILVLYIIITPRSFRFHVTDAKLTQFDYAANTSTLNYNLILNITARNPNKKLKIYYDIVRANALYDGVRFSTTDVNMPWNSYLQDKKGTNLFSAVFSGQHVMVFDRNQVSDFHEDTNDGVFPIDIKIKFRIRFRLGDYISGHFNARATCELNVPFTDSNGKTVAATAFDSTKCQVDF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3920g00004 227 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 19 211 - -
Vium3920g00004 227 Pfam Late embryogenesis abundant protein 92 198 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3920g00004 Vium-Chr3920 83984 84880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3920g00004 58 206 SNARE and Associated Proteins AT1G32270 29.530 2.81e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3920g00004 - - ccaj:109813660 295.049