LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3920g00003	ATGTCGCAACTAAACGGAGCTTACTACGGTCCCTCCATTCCGCCGCCGAAATCCTACCGCCGTCCGTCCAGCGGCGGAGGTGGGTGCGGGTGCCTGAGCTGCTGCTGTGGGTGCATCTTCAACTGCATCATCAGCCTCATCTGCAAGATCCTCACCACCGTGCTCATCATCGCCGCGGTGCTCGTGTTCCTCTTCTGGCTCATTGTGCGCCCCAACGTCCTCAAATTCCACGTCAGCGATGCCTCTCTCACTCGCTTCACGTTCTCCAACAACACGCTCCACTACAACCTCGCCCTCAACGTCTCCATCCGCAACCCCAACCGCAGAGTCGGCGTCTACTACGACCAAATCGAAGCGCTCGCTTTATACGACGATGTTCGATTCGCCTCCCAGACCCTGGGGCCCTTCTTCCAGCACACCAAAAACACCACCTTCATCAACCCCCTTTTTAACGGCCAGCGCGTGACGCCACTCACGGCTGAGCAGGGTTCCCATTTCGAAAAGGAGAACGGCGCCGGGATTTTCTCCATCGACTTGAACCTCTTCATGAATGTTCGGTTCAAGTTCTTGTTCTTCAAAAGCCACACCGTCAGACCCAAGATTCGGTGTGGGTTGCACGTGCCGCTGAAATCGCGTAACGCAACTACCTCTCCTGACGCTGCGTTTCAGGGCACGGACTGCGATTGGATTTACAAACGATGGTGGATCCGTTGA	714	0.563	MSQLNGAYYGPSIPPPKSYRRPSSGGGGCGCLSCCCGCIFNCIISLICKILTTVLIIAAVLVFLFWLIVRPNVLKFHVSDASLTRFTFSNNTLHYNLALNVSIRNPNRRVGVYYDQIEALALYDDVRFASQTLGPFFQHTKNTTFINPLFNGQRVTPLTAEQGSHFEKENGAGIFSIDLNLFMNVRFKFLFFKSHTVRPKIRCGLHVPLKSRNATTSPDAAFQGTDCDWIYKRWWIR	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3920g00003	237	Pfam	Late embryogenesis abundant protein	100	203	IPR004864	-
	Vium3920g00003	237	PANTHER	OS05G0367900 PROTEIN	45	213	IPR044839	GO:0098542

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3920g00003	Vium-Chr3920	77830	78781	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3920g00003	68	209	SNARE and Associated Proteins	AT1G32270	37.762	1.63e-27	105

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3920g00003	-		-	pvu:PHAVU_007G268900g	379.022