Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium391g00002 ATGGCTTTTTCTCACGACTTGGAGGTGGAATCCTCTTCTCCCCCTCTTGTGTTTGACGTGCGGAGGAGCGAACCAGAGCTGGTGGCTCCGGCCAAGCCCACTCCCCGCGAGAACAAGCTGCTATCAGACATAGACACCCAAGCGGGCCTCCGAATCCAAATTCCAATCATACAGTTCTACAGAAACAACCCATCAATGGCAGGGAAGGACCCGGTTAAAGCCATTAGACACGCTCTCGCTGAAACCCTAGTTTTCTACTACCCGTTGGCTGGAAGGATTAAGGACGGTCCTGACGGAAGCCTGGTGGTGGATTGCAACGAGGAGGGTGTGATGTTCATCGAGGCCGATGCTGATATTACACTCCAACAATTCGGTCACACTATTAAACCCCCTTTCCCGAACTTCGAAGAACTCCTTTACCAACCTCCCGGTTCGGAAGCGGTCACTAATACACCCATTTTTATTATACAGGTGACGCGTTTGAAGTGCGGTGGTTTCATCTTGGCGCTCCGTTTCAACCACACCATAGTCGACGGAGTTGGCGTCTTTCAGTTCGCAACTACCATGGCAGGGATAGCTCGGGGAGTCTTGCAAGAACCTCCATTCGAACCTTTGTGGCATAGGGACCTTCTCAGAGCCAGGGACCCGCCACGTGTCACATTCAACCATCGGGAGTACGAGCAACTCACAGACTCCGGCGACGCCGTTCAACAGAACTTCGAGCAACGGTCATTCTTCTTCGGCCCGGCCGAAACTGCCGCCATCCGCGCCCTCCTCCCCCGTGACCTCGACCAGCACGCCACCACCTTCGAGGTGTTGACGTCTTACGTCTGGCGCTGCCGCACAAGAGCGCTTCAGTTCAATCCGAAGGAAGACGTCCGAATGATGTGCATCGTAGATGCGCGCGACAAGTTCAAGTCGGCCTTACTGACGAATTATTATGGTAGCTGCTTCGGGTTTCCGGCAGCTGTGGCCGCCGGCGGAGAGCTTTCCTCGGAGCCGTTGGAGTATGCGGTGAGGCTTATACAGAAGGCAAGGAGCGAGGTGAGCGAGGAGTATGTTCACTCGGTGGCGGATCTGATGGCGACTTCGGGAAGGCCTTTGTTTACTGTGGTGAGGTCGTGTCTGGTTTTGGATACGACGGATATTGGATTTAGAGATTTGGATTTGGGGTGGGGGAAGGCGGTGTATGGAGGAATGGCCGTTGCTGGTGCTGGGACGTTTCCAGCAGTGAACTTTCATGTCCCTAGTCAGAACGCGAAGGGAGAGGAAGGGATTCTGGTTTTGGTTTCCTTGCCTTCACAGGTTATGAAAATCTTTGCCAAAGAGTTGGATGACAATTTGGTTAAGACCAACACAACAATCTAG 1368 0.5351 MAFSHDLEVESSSPPLVFDVRRSEPELVAPAKPTPRENKLLSDIDTQAGLRIQIPIIQFYRNNPSMAGKDPVKAIRHALAETLVFYYPLAGRIKDGPDGSLVVDCNEEGVMFIEADADITLQQFGHTIKPPFPNFEELLYQPPGSEAVTNTPIFIIQVTRLKCGGFILALRFNHTIVDGVGVFQFATTMAGIARGVLQEPPFEPLWHRDLLRARDPPRVTFNHREYEQLTDSGDAVQQNFEQRSFFFGPAETAAIRALLPRDLDQHATTFEVLTSYVWRCRTRALQFNPKEDVRMMCIVDARDKFKSALLTNYYGSCFGFPAAVAAGGELSSEPLEYAVRLIQKARSEVSEEYVHSVADLMATSGRPLFTVVRSCLVLDTTDIGFRDLDLGWGKAVYGGMAVAGAGTFPAVNFHVPSQNAKGEEGILVLVSLPSQVMKIFAKELDDNLVKTNTTI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium391g00002 455 Gene3D - 224 444 IPR023213 -
Vium391g00002 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 26 445 - -
Vium391g00002 455 Pfam Transferase family 22 444 - -
Vium391g00002 455 Gene3D - 17 223 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium391g00002 Vium-Chr391 26065 27891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium391g00002 27 444 Monolignol Biosynthesis Gene Families AT5G48930 29.032 8.38e-50 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium391g00002 K19861 - gmx:100820325 723.391