Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3915g00007 ATGATTGCGGTCAAAAGGTTGTCAAGTGGATCCAGCCAAGGAGACACAGAGTTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACAGAAATTTAGTCAGACTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGGCTACTCGTCTATGAGTTTGTTCCTAACAAAAGCCTTGATTATTTCATATTTGATCCAGCCAAGAAAGCACTGTTGGATTGGGCAATGCGATACAGAATCATAAAAGGTATTAGCCGAGGGCTTCTCTACCTTCACGAAGATTCTCTTCTGCGTATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTACTGGATCAAACTCACGCAAATACAGATAGAGTTGTGGGAACCTATGGATACATGGCACCGGAGTACATAACGCAAGGACAATTTTCGGTGAAGTCAGATATCTTTAGTTTTGGTGTACTGCTTCTTGAGATCGTAAGTGGCCAGAAAAACAGTAGCTTTCGTCATGGGGAGAATGTTGAAGACCTACTGAGCTTCACATGGAGAAACTGGAGGGAGGGAACAGCTGTAAAAATTGTAGATCCATCATTGAACAACAATTCAGTAAATGAAGTGATGAGATGCATTCATATTGGTTTGCTCTGTGTTCAAGAAAACATAACTAATAGACCAACCATGGCGACCGTTATGCTCATGCTCAGTAGCTATTATCTCAATCTTCCTATCCCTTCTGAACCTGCATTTTATGCCCACAGTACAACTAGAAGCCTTCCAGCCACGTATTCATGGGGACACAGTTCAAGGGCAACAACAAACAAATCTGCTCAAGAGTCAGAAAATGAGAATTCAATAACTGAGCTGTACCCTCGCTAG 915 0.4164 MIAVKRLSSGSSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAKKALLDWAMRYRIIKGISRGLLYLHEDSLLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTHANTDRVVGTYGYMAPEYITQGQFSVKSDIFSFGVLLLEIVSGQKNSSFRHGENVEDLLSFTWRNWREGTAVKIVDPSLNNNSVNEVMRCIHIGLLCVQENITNRPTMATVMLMLSSYYLNLPIPSEPAFYAHSTTRSLPATYSWGHSSRATTNKSAQESENENSITELYPR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3915g00007 304 FunFam cysteine-rich receptor-like protein kinase 10 53 254 - -
Vium3915g00007 304 MobiDBLite consensus disorder prediction 282 304 - -
Vium3915g00007 304 SMART serkin_6 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00007 304 Pfam Protein tyrosine and serine/threonine kinase 2 244 IPR001245 GO:0004672|GO:0006468
Vium3915g00007 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
Vium3915g00007 304 SUPERFAMILY Protein kinase-like (PK-like) 2 280 IPR011009 -
Vium3915g00007 304 PIRSF ILK 1 256 - -
Vium3915g00007 304 ProSiteProfiles Protein kinase domain profile. 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00007 304 Gene3D Phosphorylase Kinase; domain 1 1 52 - -
Vium3915g00007 304 Gene3D Transferase(Phosphotransferase) domain 1 53 254 - -
Vium3915g00007 304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3915g00007 Vium-Chr3915 40290 41645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3915g00007 2 304 Receptor kinase-like Gene Family AT4G21410 60.586 1.85e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3915g00007 PK_Tyr_Ser-Thr 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3915g00007 - - var:108324785 597.816