Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3915g00006 ATGGTCATACCTATGGCCGCTGTTTCTTGCATGCTTGCTTTTCTTCTCTCTTGTCTAATATCTAGAGCCAGCGCCCAGGTTACCCACAAGTACTGTGATAACAAGGAAGGGAACTACACAATCAATAGCACCTATCACAACAATCTCAACACCCTTCTATCCAAGCTTTCTTCCCACACAGAAATTAATTATGGTTTCTACAACTTCTCATATGGTCAAAACAATGACAAAGTAAACGCCATTGGGCTATGCAGAGGAGATGTTGAGCCAGATAAGTGCCGCAGGTGCCTCAACGATTCTGCAGCCACGATCACACAGCTTTGTCCAAACCAGAAAGAGGCATATTTGTGGTTGAAGACCAACGAATGCCAGTTGAGTTATTCTCCGCGCTCAATATTCGGTGTCGTGGAATCTTCTCCTTGGTTCTACATGAAGAACAGTAACAATGTAACGGAACCGGATAAGTTTAACCAAGCCCTCACCAACTTAATGAAGAATCTCACAGCCGTGGCTGCATCAGGTGACTCTCGTCGCAAGTATGCTGCGGATAGTGTTGATGTTTCAACTCTTCAAACCATATATGGTCTTGTGCAGTGCACCCCTGATTTGTCCGAGACAGACTGCAATAGATGCTTGGATGGGGCTATATACGAAATCTCATCGTGTTGTGCGAACAAGAAGGGTGTTAGAGTTGTTAGACCAAGTTGTAATATTAGATTCGAAACTTACAGCTTCTACGATCAAACGCCTAAATTAGACCCTGATGCAATACCACCATCACCATCATCTCCTTCCTCCTTCAATAACACTTCCGCCAAAGAGAGCAAAAACACAACAATTGTCATTGCCGTTGTTGTTCCTACTGTCGTTCTTGCTGTCGTTTCCCTCCTTTGTCTCTGCAGTTATTTAAGTAGGAGGAAGGCAAGAAAACGTTTAGCAGTTAATCAAGATGATGATGACATCGAAATTACTCAGTCATTGCAATTTGACTTCGAGACAATACGAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGAGAAGGTGGATTTGGAGCTGTTTACAAGGGTAGGCTCCCCAATGAACAGATGATTGCGGTCAAAAGGTTGTCAAGTGGATCCAGCCAAGGAGACACAGAGTTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACAGAAATTTAGTCAGACTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGGCTACTCGTCTATGAGTTTGTTCCTAACAAAAGCCTTGATTATTTCATATTTGATCCAGCCAAGAAAGCACTGTTGGATTGGGCAATGCGATACAGAATCATAAAAGGTATTAGCCGAGGGCTTCTCTACCTTCACGAAGATTCTCTTCTGCGTATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTACTGGATCAAACTCACGCAAATACAGATAGAGTTGTGGGAACCTATGGATACATGGCACCGGAGTACATAACGCAAGGACAATTTTCGGTGAAGTCAGATATCTTTAGTTTTGGTGTACTGCTTCTTGAGATCGTAAGTGGCCAGAAAAACAGTAGCTTTCGTCATGGGGAGAATGTTGAAGACCTACTGAGCTTCACATGGAGAAACTGGAGGGAGGGAACAGCTGTAAAAATTGTAGATCCATCATTGAACAACAATTCAGTAAATGAAGTGATGAGATGCATTCATATTGGTTTGCTCTGTGTTCAAGAAAACATAACTAATAGACCAACCATGGCGACCGTTATGCTCATGCTCAGTAGCTATTCTCTCAGTCTTCCCATCCCTTCTGAACCTGCATTTTATGCCCACAGTACAACTAGAAGCCTTCCAGCCACGTATTCATGGGGACACAGTTCAAGGGCAACAACAAACAAATCTGCTCAAGAGTCAGAAAATGAGAATTCAATAACTGAGCTGTACCCTCGCTAG 2007 0.427 MVIPMAAVSCMLAFLLSCLISRASAQVTHKYCDNKEGNYTINSTYHNNLNTLLSKLSSHTEINYGFYNFSYGQNNDKVNAIGLCRGDVEPDKCRRCLNDSAATITQLCPNQKEAYLWLKTNECQLSYSPRSIFGVVESSPWFYMKNSNNVTEPDKFNQALTNLMKNLTAVAASGDSRRKYAADSVDVSTLQTIYGLVQCTPDLSETDCNRCLDGAIYEISSCCANKKGVRVVRPSCNIRFETYSFYDQTPKLDPDAIPPSPSSPSSFNNTSAKESKNTTIVIAVVVPTVVLAVVSLLCLCSYLSRRKARKRLAVNQDDDDIEITQSLQFDFETIRVATEDFSDSNKLGEGGFGAVYKGRLPNEQMIAVKRLSSGSSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAKKALLDWAMRYRIIKGISRGLLYLHEDSLLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTHANTDRVVGTYGYMAPEYITQGQFSVKSDIFSFGVLLLEIVSGQKNSSFRHGENVEDLLSFTWRNWREGTAVKIVDPSLNNNSVNEVMRCIHIGLLCVQENITNRPTMATVMLMLSSYSLSLPIPSEPAFYAHSTTRSLPATYSWGHSSRATTNKSAQESENENSITELYPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3915g00006 668 Pfam Protein kinase domain 342 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00006 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vium3915g00006 668 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Vium3915g00006 668 Pfam Salt stress response/antifungal 32 128 IPR002902 -
Vium3915g00006 668 Pfam Salt stress response/antifungal 148 243 IPR002902 -
Vium3915g00006 668 SMART serkin_6 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00006 668 FunFam cysteine-rich receptor-like protein kinase 10 417 618 - -
Vium3915g00006 668 FunFam Cysteine-rich receptor-like protein kinase 10 141 245 - -
Vium3915g00006 668 CDD STKc_IRAK 347 607 - -
Vium3915g00006 668 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Vium3915g00006 668 SUPERFAMILY Protein kinase-like (PK-like) 323 611 IPR011009 -
Vium3915g00006 668 ProSiteProfiles Protein kinase domain profile. 341 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00006 668 Gene3D Phosphorylase Kinase; domain 1 302 416 - -
Vium3915g00006 668 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
Vium3915g00006 668 Gene3D Transferase(Phosphotransferase) domain 1 417 618 - -
Vium3915g00006 668 MobiDBLite consensus disorder prediction 644 668 - -
Vium3915g00006 668 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 664 - -
Vium3915g00006 668 MobiDBLite consensus disorder prediction 251 272 - -
Vium3915g00006 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 132 - -
Vium3915g00006 668 FunFam Cysteine-rich receptor-like protein kinase 10 304 416 - -
Vium3915g00006 668 Gene3D - 23 131 IPR038408 -
Vium3915g00006 668 Gene3D - 139 245 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3915g00006 Vium-Chr3915 38169 49317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3915g00006 14 668 Receptor kinase-like Gene Family AT4G21410 48.321 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3915g00006 Pkinase 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3915g00006 - - var:108324785 1261.51