Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3915g00005 ATGAGAGTGGCAGCAATCTCCCGCATGTTTATTCTATTTCTTTGTTTTCCATTTCTAAAATTTATATCTCTAGGCAGCGCCCAGAATGTTTGTGACAACGGCCACGGCAACTACACAGCCAACAGCACCTACAGCACCAACCTCAACACCCTTTTATCCAGTCTGTCTTCCGACACACAAATTGACTACGGTTTCTACAACTTTTCATACGGGGAAAACAGTAACATAGTAAACGCCATAGGGCTGTGTAGAGGAGATCTTGAGCCAGAGGAGTGCCGCAGCTGCCTCAACGATTCCAGAGTCGATATAACACAGGCTTGTCCAAACCAGAAAAAGGCAATTCTGTGGTCCGAGAAATGCATGTTGCGCTACTCTAACGACACAATATTCCACAAGATGGAAACTTCTCCTGGTTATTACATGTGGAACGCAAACAATGTAACAGAACCGGATCAGTTCAGCGCAGTGCTCGATGACTTAATGAAGAACGTAACAGGCAGAGCTGCATCAGGTGACTCTCGCCGTAAGTATGCTACGGCGGAAAATTCAACTGCTATAAATTTTCAAACCGTATACGGTCTTGTGCAGTGCACCCCTGATTTGTCTCAGCAAGAATGTAATCAATGTTTAGAAGGGGCTATCTCAGAAATTCCAACTTGCTGCAATGGCAAGCAAGGTGGTAGAGTTCTTAGACCAAGTTGTAATATTAGATTTGAAACTTACAGCTTCTACGAAACTGCAACAACGTTAGACCCGGATCCGGAGGCACCTCCTCCGTCCACCAATACCACTTCCTCAGAAGAAAGTGGCAACACAACAATAATTGTCATCGCCATAGTTGTGGCTACTGTTGTTGTCGTTATTTTGCTCATTTGTCTCCTCCTATATCTAAGGAGGAGGAAGGCAAGGAAAGATCTTGCAGAAGAAGATGAAGATGAGGATGGAATTAAAATTGCCGAGTCATTGCAATTCAACTTTGACACAATACGAGTAGCCACAGAAGACTTCTCTGATTCCAATAAACTTGGACAAGGTGGATTTGGAGCTGTTTACCGAGGTAGGCTGTCCAATGGACAGATGATTGCAGTGAAAAGGTTGTCCAGAGATTCTGGGCAAGGAGACGTGGAATTTAAGAATGAAGTGGTTTTAGTGGTGAAACTTCAACACCGAAATTTAGTTAGACTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAGCCATGAAAGCACAATTGGATTGGGAAAAGCGCTACCAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAACTACGAATTATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTATTGGATCAAACTCAAGCAAACACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCGGTGAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAACAGTGGAATCAATAATGGAGAGAATATGGAGGATCTGCTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGGCATTAAATATTATAGATCCATCACTCAACAACAATTCACGGAATGAAATTCTGAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATTTAATTGACAGACCGACCATGGCTACCATTATACTGATGCTTAACAGCTATTCTCTGAGTCTCCCTATTCCTGCAGAACCTGCATTTTATATGAACAGTAGAACTAGAAGCTTTCCAGAGATGCAGTCATGGGAGTATAATTCAAGAGAAAGAGGATCAAGTGAACCGATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTATACCCTCGCTAG 2007 0.4195 MRVAAISRMFILFLCFPFLKFISLGSAQNVCDNGHGNYTANSTYSTNLNTLLSSLSSDTQIDYGFYNFSYGENSNIVNAIGLCRGDLEPEECRSCLNDSRVDITQACPNQKKAILWSEKCMLRYSNDTIFHKMETSPGYYMWNANNVTEPDQFSAVLDDLMKNVTGRAASGDSRRKYATAENSTAINFQTVYGLVQCTPDLSQQECNQCLEGAISEIPTCCNGKQGGRVLRPSCNIRFETYSFYETATTLDPDPEAPPPSTNTTSSEESGNTTIIVIAIVVATVVVVILLICLLLYLRRRKARKDLAEEDEDEDGIKIAESLQFNFDTIRVATEDFSDSNKLGQGGFGAVYRGRLSNGQMIAVKRLSRDSGQGDVEFKNEVVLVVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAMKAQLDWEKRYQIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTQANTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKALNIIDPSLNNNSRNEILRCIHIGLLCVQENLIDRPTMATIILMLNSYSLSLPIPAEPAFYMNSRTRSFPEMQSWEYNSRERGSSEPILKSAQESENEASITELYPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3915g00005 668 FunFam Cysteine-rich receptor-like protein kinase 10 137 243 - -
Vium3915g00005 668 Pfam Protein tyrosine and serine/threonine kinase 339 603 IPR001245 GO:0004672|GO:0006468
Vium3915g00005 668 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Vium3915g00005 668 Gene3D - 135 243 IPR038408 -
Vium3915g00005 668 Gene3D - 26 128 IPR038408 -
Vium3915g00005 668 Gene3D Phosphorylase Kinase; domain 1 299 411 - -
Vium3915g00005 668 ProSiteProfiles Protein kinase domain profile. 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00005 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vium3915g00005 668 CDD STKc_IRAK 342 607 - -
Vium3915g00005 668 MobiDBLite consensus disorder prediction 637 661 - -
Vium3915g00005 668 MobiDBLite consensus disorder prediction 248 268 - -
Vium3915g00005 668 Gene3D Transferase(Phosphotransferase) domain 1 412 613 - -
Vium3915g00005 668 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vium3915g00005 668 Pfam Salt stress response/antifungal 145 241 IPR002902 -
Vium3915g00005 668 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Vium3915g00005 668 MobiDBLite consensus disorder prediction 637 668 - -
Vium3915g00005 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 129 - -
Vium3915g00005 668 ProSiteProfiles Gnk2-homologous domain profile. 135 243 IPR002902 -
Vium3915g00005 668 FunFam Cysteine-rich receptor-like protein kinase 17 305 411 - -
Vium3915g00005 668 FunFam cysteine-rich receptor-like protein kinase 10 412 613 - -
Vium3915g00005 668 SMART serkin_6 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00005 668 SUPERFAMILY Protein kinase-like (PK-like) 322 638 IPR011009 -
Vium3915g00005 668 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3915g00005 Vium-Chr3915 13133 16453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3915g00005 8 668 Receptor kinase-like Gene Family AT4G21410 49.928 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3915g00005 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3915g00005 - - var:108324785 1164.06