Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3915g00004 ATGAGAGTGGCAGCAATCTCCCGCATGTTTATTCTATTTCTTTGTTTTCCATTTCTAAAATTTATATCTCTAGGCAGCGCCCAGAATGTTTGTGACAACGGCCACGGCAACTACACAGCCAACAGCACCTACAGCACCAACCTCAACACCCTTTTATCCAGTCTGTCTTCCGACACACAAATTGACTACGGTTTCTACAACTTTTCATACGGGGAAAACAGTAACATAGTAAACGCCATAGGGCTGTGTAGAGGAGATCTTGAGCCAGAGGAGTGCCGCAGCTGCCTCAACGATTCCAGAGTCGATATAACACAGGCTTGTCCAAACCAGAAAAAGGCAATTCTGTGGTCCGAGAAATGCATGTTGCGCTACTCTAACGACACAATATTCCACAAGATGGAAACTTCTCCTGGTTATTACATGTGGAACGCAAACAATGTAACAGAACCGGATCAGTTCAGCGCAGTGCTCGATGACTTAATGAAGAACGTAACAGGCAGAGCTGCATCAGGTGACTCTCGCCGTAAGTATGCTACGGCGGAAAATTCAACTGCTATAAATTTTCAAACCGTATACGGTCTTGTGCAGTGCACCCCTGATTTGTCTCAGCAAGAATGTAATCAATGTTTAGAAGGGGCTATCTCAGAAATTCCAACTTGCTGCAATGGCAAGCAAGGTGGTAGAGTTCTTAGACCAAGTTGTAATATTAGATTTGAAACTTACAGCTTCTACGAAACTGCAACAACGTTAGACCCGGATCCGGAGGCACCTCCTCCGTCCACCAATACCACTTCCTCAGAAGGTACTTCTTTTTCTTCTCAAACAATAATTGTCATCGCCATAGTTGTGGCTACTGTTGTTGTCGTTATTTTGCTCATTTGTCTCCTCCTATATCTAAGGAGGAGGAAGGCAAGGAAAGATCTTGCAGGCAAGTCCAAAGATGAAGATGAGGATGGAATTAAAATTGCCGAGTCATTGCAATTCAACTTTGACACAATACGAGTAGCCACAGAAGACTTCTCTGATTCCAATAAACTTGGACAAGGTGGATTTGGAGCTGTTTACCGAGGTAGGCTGTCCAATGGACAGATGATTGCAGTGAAAAGGTTGTCCAGAGATTCTGGGCAAGGAGACGTGGAATTTAAGAATGAAGTGGTTTTAGTGGTGAAACTTCAACACCGAAATTTAGTTAGACTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAGCCATGAAAGCACAATTGGATTGGGAAAAGCGCTACCAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAACTACGAATTATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTATTGGATCAAACTCAAGCAAACACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCGGTGAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAACAGTGGAATCAATAATGGAGAGAATATGGAGGATCTGCTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGGCATTAAATATTATAGATCCATCACTCAACAACAATTCACGGAATGAAATTCTGAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATTTAATTGACAGACCGACCATGGCTACCATTATACTGATGCTTAACAGCTATTCTCTGAGTCTCCCTATTCCTGCAGAACCTGCATTTTATATGAACAGTAGAACTAGAAGCTTTCCAGAGATGCAGTCATGGGAGTATAATTCAAGAGAAAGAGGATCAAGTGAACCGATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTATACCCTCGCTAG 2019 0.419 MRVAAISRMFILFLCFPFLKFISLGSAQNVCDNGHGNYTANSTYSTNLNTLLSSLSSDTQIDYGFYNFSYGENSNIVNAIGLCRGDLEPEECRSCLNDSRVDITQACPNQKKAILWSEKCMLRYSNDTIFHKMETSPGYYMWNANNVTEPDQFSAVLDDLMKNVTGRAASGDSRRKYATAENSTAINFQTVYGLVQCTPDLSQQECNQCLEGAISEIPTCCNGKQGGRVLRPSCNIRFETYSFYETATTLDPDPEAPPPSTNTTSSEGTSFSSQTIIVIAIVVATVVVVILLICLLLYLRRRKARKDLAGKSKDEDEDGIKIAESLQFNFDTIRVATEDFSDSNKLGQGGFGAVYRGRLSNGQMIAVKRLSRDSGQGDVEFKNEVVLVVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAMKAQLDWEKRYQIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTQANTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKALNIIDPSLNNNSRNEILRCIHIGLLCVQENLIDRPTMATIILMLNSYSLSLPIPAEPAFYMNSRTRSFPEMQSWEYNSRERGSSEPILKSAQESENEASITELYPR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3915g00004 672 ProSiteProfiles Protein kinase domain profile. 340 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00004 672 FunFam Cysteine-rich receptor-like protein kinase 17 309 415 - -
Vium3915g00004 672 FunFam cysteine-rich receptor-like protein kinase 10 416 617 - -
Vium3915g00004 672 Gene3D Transferase(Phosphotransferase) domain 1 416 617 - -
Vium3915g00004 672 CDD STKc_IRAK 346 611 - -
Vium3915g00004 672 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Vium3915g00004 672 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vium3915g00004 672 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Vium3915g00004 672 Pfam Salt stress response/antifungal 145 241 IPR002902 -
Vium3915g00004 672 SMART serkin_6 340 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00004 672 MobiDBLite consensus disorder prediction 248 268 - -
Vium3915g00004 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vium3915g00004 672 FunFam Cysteine-rich receptor-like protein kinase 10 137 243 - -
Vium3915g00004 672 Pfam Protein tyrosine and serine/threonine kinase 343 607 IPR001245 GO:0004672|GO:0006468
Vium3915g00004 672 MobiDBLite consensus disorder prediction 641 665 - -
Vium3915g00004 672 ProSiteProfiles Gnk2-homologous domain profile. 135 243 IPR002902 -
Vium3915g00004 672 Gene3D Phosphorylase Kinase; domain 1 303 415 - -
Vium3915g00004 672 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 129 - -
Vium3915g00004 672 SUPERFAMILY Protein kinase-like (PK-like) 326 642 IPR011009 -
Vium3915g00004 672 Gene3D - 135 243 IPR038408 -
Vium3915g00004 672 Gene3D - 26 128 IPR038408 -
Vium3915g00004 672 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 669 - -
Vium3915g00004 672 MobiDBLite consensus disorder prediction 641 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3915g00004 Vium-Chr3915 13133 16453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3915g00004 8 672 Receptor kinase-like Gene Family AT4G21410 50.072 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3915g00004 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3915g00004 - - var:108324785 1176.77