Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3915g00003 ATGATAATACGCAAAGCTTCAGTTAAGATTGTTGGTTGTTCTGATTATGTGATGGGTGCCGTTTCTTGCATGCTTCTTTTCTTTCTCTGTTGTCTAATACCTGAAGCCAGTGCCCAGTATCTCTTCCTAAACTGTGATAACAACAACGGGAACTACACAGCTAATGGCACCTATAGCACCAATCTCAACACCCTTTTATCCACTCTTTCTTCCAACACAGAAATCAACTATGGTTTCTACAACTTCTCCCATGGTCAAAACGCAGACAGAGTCAACGCCATTGGGCTGTGCAGGGGAGATGTGGAGGAAAATCCGTGCCGCAGTTGCCTCAAAGATGCCGGAGGCAATATCACAGAGCTTTGTCCAAACCAGAAACAGGCTGCTATATATTATGACAACTGCATGTTGCGCTACTCAAACGACTCAATATTTGGGGTCTTGGATATTTCTCCCCACTTTTATATGTCGAACTCAAATAATGCAACAGGAGCGGCTGAGTTCAATCAAGTGCTTCAAAACTTATTAAGGGAACTCAAAGATAAAGCAGCATCCGGTGACTCCCGTCGTAAGTATGCTACGGATAATGACACAACTACCAATTTTCAAGCCATATATGGTCTTGTGCAATGCACCCCTGATTTGACTCAGACAGAGTGCAACGATTGCTTGGATGAGGCTATCTCACGAATCCCAACTTGCTGCAACGACAAGAGAGGTGGTAGAGTTGTTGGACCCAGCTGCAATATTAGATATGAAGATTATCGCTTCTATGAACAGACAACGATAATAGACCCAGAGACACCACCACCCACAATTAACACTTCCACGGAAGAAAGTAGCAACACAACAACAATTGTCATTGCCGTAGTTGTGCCTACTGTTGTTGTTATTTCGCTATGTCTCTTCATTTGTTTAAGGAGGAGAAAGGCAAGGAAAAATCTTGAAGTTAAAAAAGAAGAAAGTGAAGAAGAAGATGAGGATGAAATTAAAATTGCCGACTCGTTGCAATTCAACTTTGACACAATACGAGTTGCTACCGAGGACTTCTCTGATTCTAATAAACTTGGACAAGGCGGATTTGGAGCTGTTTACCGGGGTAAACTCTCCAATGGACAGATAATTGCAGTGAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATGTTGAATTTAAGAATGAAGTGCTTTTAGTGGTGAAGCTTCAGCACCGAAATTTAGTTCGGCTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAGCCATGAAAGCACAATTGGATTGGGAAAAGCGCTACAAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAACTACGAATTATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTATTGGATCAAACTCAAGCAAACACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCAGAATATGCAATGCATGGACAGTTTTCAGCGAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAACAGTGGAATCAATAATGGGGAGAATATGGAGGATCTACTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGCCATTAAATATTGTAGATCCATCACTCAACAACAATTCACGGAATGAAATGCTGAGATGCATCCATATTGGGTTACTATGTGTTCAAGAAAATTTAGTTGACAAAACGAACATGGCTACCATTATCCTGATGCTTAATAGACATTCTCTAAGTCTCCATATTCCAACCGAACCTGCATTTTATATGAACAGTAGAACTAGAAGCTTTCCAGGGATGCAGTCATGGGAGTATAATTCAAGGGAAATGGGATCAAGTGAACCGATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTATACCCTCGCTAG 2046 0.4096 MIIRKASVKIVGCSDYVMGAVSCMLLFFLCCLIPEASAQYLFLNCDNNNGNYTANGTYSTNLNTLLSTLSSNTEINYGFYNFSHGQNADRVNAIGLCRGDVEENPCRSCLKDAGGNITELCPNQKQAAIYYDNCMLRYSNDSIFGVLDISPHFYMSNSNNATGAAEFNQVLQNLLRELKDKAASGDSRRKYATDNDTTTNFQAIYGLVQCTPDLTQTECNDCLDEAISRIPTCCNDKRGGRVVGPSCNIRYEDYRFYEQTTIIDPETPPPTINTSTEESSNTTTIVIAVVVPTVVVISLCLFICLRRRKARKNLEVKKEESEEEDEDEIKIADSLQFNFDTIRVATEDFSDSNKLGQGGFGAVYRGKLSNGQIIAVKRLSRDSGQGDVEFKNEVLLVVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAMKAQLDWEKRYKIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTQANTSRIVGTYGYMAPEYAMHGQFSAKSDVFSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKPLNIVDPSLNNNSRNEMLRCIHIGLLCVQENLVDKTNMATIILMLNRHSLSLHIPTEPAFYMNSRTRSFPGMQSWEYNSREMGSSEPILKSAQESENEASITELYPR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3915g00003 681 Gene3D Transferase(Phosphotransferase) domain 1 425 628 - -
Vium3915g00003 681 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Vium3915g00003 681 SUPERFAMILY Protein kinase-like (PK-like) 337 648 IPR011009 -
Vium3915g00003 681 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Vium3915g00003 681 Gene3D - 38 142 IPR038408 -
Vium3915g00003 681 Gene3D - 150 256 IPR038408 -
Vium3915g00003 681 Coils Coil 307 327 - -
Vium3915g00003 681 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 38 143 - -
Vium3915g00003 681 Gene3D Phosphorylase Kinase; domain 1 309 424 - -
Vium3915g00003 681 Pfam Salt stress response/antifungal 45 140 IPR002902 -
Vium3915g00003 681 Pfam Salt stress response/antifungal 159 254 IPR002902 -
Vium3915g00003 681 MobiDBLite consensus disorder prediction 660 681 - -
Vium3915g00003 681 ProSiteProfiles Gnk2-homologous domain profile. 40 143 IPR002902 -
Vium3915g00003 681 FunFam cysteine-rich receptor-like protein kinase 10 425 626 - -
Vium3915g00003 681 Pfam Protein tyrosine and serine/threonine kinase 352 550 IPR001245 GO:0004672|GO:0006468
Vium3915g00003 681 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 677 - -
Vium3915g00003 681 FunFam Cysteine-rich receptor-like protein kinase 10 151 256 - -
Vium3915g00003 681 FunFam Cysteine-rich receptor-like protein kinase 17 317 424 - -
Vium3915g00003 681 MobiDBLite consensus disorder prediction 660 674 - -
Vium3915g00003 681 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00003 681 SMART serkin_6 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00003 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Vium3915g00003 681 CDD STKc_IRAK 355 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3915g00003 Vium-Chr3915 5471 8720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3915g00003 45 681 Receptor kinase-like Gene Family AT4G38830 48.858 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3915g00003 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3915g00003 - - vra:106771832 1158.67