Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3915g00002 ATGATAATACGCAAAGCTTCAGTTAAGATTGTTGGTTGTTCTGATTATGTGATGGGTGCCGTTTCTTGCATGCTTCTTTTCTTTCTCTGTTGTCTAATACCTGAAGCCAGTGCCCAGTATCTCTTCCTAAACTGTGATAACAACAACGGGAACTACACAGCTAATGGCACCTATAGCACCAATCTCAACACCCTTTTATCCACTCTTTCTTCCAACACAGAAATCAACTATGGTTTCTACAACTTCTCCCATGGTCAAAACGCAGACAGAGTCAACGCCATTGGGCTGTGCAGGGGAGATGTGGAGAAAAATCCGTGCCGCAGTTGCCTCAAAGATGCCGGAGGCAATATCACAGAGCTTTGTCCAAACCAGAAACAGGCTGCTATATATTATGACAACTGCATGTTGCGCTACTCAAACGACTCAATATTTGGGGTCTTGGATATTTCTCCCCACTTTTATATGTCGAACTCAAATAATGCAACAGGAGCGGCTGAGTTCAATCAAGTGCTTCAAAACTTATTAAGGGAACTCAAAGATAAAGCAGCATCCGGTGACTCCCGTCGTAAGTATGCTACGGATAATGACACAACTACCAATTTTCAAGCCATATATGGTCTTGTGCAATGCACCCCTGATTTGACTCAGACAGAGTGCAACGATTGCTTGGATGAGGCTATCTCACGAATCCCAACTTGCTGCAACGACAAGAGAGGTGGTAGAGTTGTTGGACCCAGCTGCAATATTAGATATGAAGATTATCGCTTCTATGAACAGACAACGATAATAGACCCAGAGACAACACCACCCACAATTAACACTTCCACGGAAGAAAGTAGCAACACAACAACAATTGTCATTGCCGTAGTTGTGCCTACTGTTGTTGTTATTTCGCTATGTCTCTTCATTTGTTTAAGGAGGAGAAAGAAGAAGATGAAGATGAGGATGAAATTAAAATTGCCGACTCAAGATGAGGATGAAATTAAAATTGCCGACTCGTTGCAATTCAACTTTGACACAATACGAGTTGCTACCGAGGACTTCTCTGATTCTAATAAACTTGGACAAGGCGGATTTGGAGCTGTTTACCGGGGTAAACTCTCCAATGGACAGATAATTGCAGTGAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATGTTGAATTTAAGAATGAAGTGCTTTTAGTGGTGAAGCTTCAGCACCGAAATTTAGTTCGGCTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAGCCATGAAAGCACAATTGGATTGGGAAAAGCGCTACAAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAACTACGAATTATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTATTGGATCAAACTCAAGCAAACACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCAGAATATGCAATGCATGGACAGTTTTCAGCGAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAACAGTGGAATCAATAATGGGGAGAATATGGAGGATCTACTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGCCATTAAATATTGTAGATCCATCACTCAACAACAATTCACGGAATGAAATGCTGAGATGCATCCATATTGGGTTACTATGTGTTCAAGAAAATTTAGTTGACAAAACGAACATGGCTACCATTATCCTGATGCTTAATAGACATTCTCTAAGTCTCCATATTCCAACCGAACCTGCATTTTATATGAACAGTAGAACTAGAAGCTTTCCAGGGATGCAGTCATGGGAGTATAATTCAAGGGAAATGGGATCAAGTGAACCGATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTATACCCTCGCTAG 2043 0.4097 MIIRKASVKIVGCSDYVMGAVSCMLLFFLCCLIPEASAQYLFLNCDNNNGNYTANGTYSTNLNTLLSTLSSNTEINYGFYNFSHGQNADRVNAIGLCRGDVEKNPCRSCLKDAGGNITELCPNQKQAAIYYDNCMLRYSNDSIFGVLDISPHFYMSNSNNATGAAEFNQVLQNLLRELKDKAASGDSRRKYATDNDTTTNFQAIYGLVQCTPDLTQTECNDCLDEAISRIPTCCNDKRGGRVVGPSCNIRYEDYRFYEQTTIIDPETTPPTINTSTEESSNTTTIVIAVVVPTVVVISLCLFICLRRRKKKMKMRMKLKLPTQDEDEIKIADSLQFNFDTIRVATEDFSDSNKLGQGGFGAVYRGKLSNGQIIAVKRLSRDSGQGDVEFKNEVLLVVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAMKAQLDWEKRYKIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTQANTSRIVGTYGYMAPEYAMHGQFSAKSDVFSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKPLNIVDPSLNNNSRNEMLRCIHIGLLCVQENLVDKTNMATIILMLNRHSLSLHIPTEPAFYMNSRTRSFPGMQSWEYNSREMGSSEPILKSAQESENEASITELYPR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3915g00002 680 CDD STKc_IRAK 354 620 - -
Vium3915g00002 680 FunFam Cysteine-rich receptor-like protein kinase 17 317 423 - -
Vium3915g00002 680 FunFam cysteine-rich receptor-like protein kinase 10 424 625 - -
Vium3915g00002 680 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Vium3915g00002 680 MobiDBLite consensus disorder prediction 659 680 - -
Vium3915g00002 680 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00002 680 ProSiteProfiles Gnk2-homologous domain profile. 40 143 IPR002902 -
Vium3915g00002 680 Pfam Salt stress response/antifungal 159 254 IPR002902 -
Vium3915g00002 680 Pfam Salt stress response/antifungal 45 140 IPR002902 -
Vium3915g00002 680 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 38 143 - -
Vium3915g00002 680 Gene3D Phosphorylase Kinase; domain 1 308 423 - -
Vium3915g00002 680 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Vium3915g00002 680 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 676 - -
Vium3915g00002 680 Gene3D - 38 142 IPR038408 -
Vium3915g00002 680 Gene3D - 150 256 IPR038408 -
Vium3915g00002 680 MobiDBLite consensus disorder prediction 659 673 - -
Vium3915g00002 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vium3915g00002 680 FunFam Cysteine-rich receptor-like protein kinase 10 151 256 - -
Vium3915g00002 680 SUPERFAMILY Protein kinase-like (PK-like) 336 647 IPR011009 -
Vium3915g00002 680 Pfam Protein tyrosine and serine/threonine kinase 351 549 IPR001245 GO:0004672|GO:0006468
Vium3915g00002 680 SMART serkin_6 348 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00002 680 Gene3D Transferase(Phosphotransferase) domain 1 424 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3915g00002 Vium-Chr3915 904 8720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3915g00002 25 680 Receptor kinase-like Gene Family AT4G21410 48.480 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3915g00002 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3915g00002 - - vra:106771832 1140.18