Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3915g00001 ATGATAATACGCAAAGCTTCAGTTAAGATTGTTGGTTGTTCTGATTATGTGATGGGTGCCGTTTCTTGCATGCTTCTTTTCTTTCTCTGTTGTCTAATACCTGAAGCCAGTGCCCAGTATCTCTTCCTAAACTGTGATAACAACAACGGGAACTACACAGCTAATGGCACCTATAGCACCAATCTCAACACCCTTTTATCCACTCTTTCTTCCAACACAGAAATCAACTATGGTTTCTACAACTTCTCCCATGGTCAAAACGCAGACAGAGTCAACGCCATTGGGCTGTGCAGGGGAGATGTGGAGAAAAATCCGTGCCGCAGTTGCCTCAAAGATGCCGGAGGCAATATCACAGAGCTTTGTCCAAACCAGAAACAGGCTGCTATATATTATGACAACTGCATGTTGCGCTACTCAAACGACTCAATATTTGGGGTCTTGGATATTTCTCCCCACTTTTATATGTCGAACTCAAATAATGCAACAGGAGCGGCTGAGTTCAATCAAGTGCTTCAAAACTTATTAAGGGAACTCAAAGATAAAGCAGCATCCGGTGACTCCCGTCGTAAGTATGCTACGGATAATGACACAACTACCAATTTTCAAGCCATATATGGTCTTGTGCAATGCACCCCTGATTTGACTCAGACAGAGTGCAACGATTGCTTGGATGAGGCTATCTCACGAATCCCAACTTGCTGCAACGACAAGAGAGGTGGTAGAGTTGTTGGACCCAGCTGCAATATTAGATATGAAGATTATCGCTTCTATGAACAGACAACGATAATAGACCCAGAGACAACACCACCCACAATTAACACTTCCACGGAAGGTACTTATCATTATATTTTGCTTCTCAATAGCCTAATAATTACAGTTGAGTGTCACAACACAACAACAATTGTCATTGCCGTAGTTGTGCCTACTGTTGTTGTTATTTCGCTATGTCTCTTCATTTTTAAAAAAGAAGAAAGTGAAGAAGAAGATGAGGATGAAATTAAAATTGCCGACTCGTTGCAATTCAACTTTGACACAATACGAGTTGCTACCGAGGACTTCTCTGATTCTAATAAACTTGGACAAGGCGGATTTGGAGCTGTTTACCGGGGTAAACTCTCCAATGGACAGATAATTGCAGTGAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATGTTGAATTTAAGAATGAAGTGCTTTTAGTGGTGAAGCTTCAGCACCGAAATTTAGTTCGGCTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAGCCATGAAAGCACAATTGGATTGGGAAAAGCGCTACAAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAACTACGAATTATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTATTGGATCAAACTCAAGCAAACACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCAGAATATGCAATGCATGGACAGTTTTCAGCGAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAACAGTGGAATCAATAATGGGGAGAATATGGAGGATCTACTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGCCATTAAATATTGTAGATCCATCACTCAACAACAATTCACGGAATGAAATGCTGAGATGCATCCATATTGGGTTACTATGTGTTCAAGAAAATTTAGTTGACAAAACGAACATGGCTACCATTATCCTGATGCTTAATAGACATTCTCTAAGTCTCCATATTCCAACCGAACCTGCATTTTATATGAACAGTAGAACTAGAAGCTTTCCAGGGATGCAGTCATGGGAGTATAATTCAAGGGAAATGGGATCAAGTGAACCGATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTATACCCTCGCTAG 2058 0.4062 MIIRKASVKIVGCSDYVMGAVSCMLLFFLCCLIPEASAQYLFLNCDNNNGNYTANGTYSTNLNTLLSTLSSNTEINYGFYNFSHGQNADRVNAIGLCRGDVEKNPCRSCLKDAGGNITELCPNQKQAAIYYDNCMLRYSNDSIFGVLDISPHFYMSNSNNATGAAEFNQVLQNLLRELKDKAASGDSRRKYATDNDTTTNFQAIYGLVQCTPDLTQTECNDCLDEAISRIPTCCNDKRGGRVVGPSCNIRYEDYRFYEQTTIIDPETTPPTINTSTEGTYHYILLLNSLIITVECHNTTTIVIAVVVPTVVVISLCLFIFKKEESEEEDEDEIKIADSLQFNFDTIRVATEDFSDSNKLGQGGFGAVYRGKLSNGQIIAVKRLSRDSGQGDVEFKNEVLLVVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAMKAQLDWEKRYKIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTQANTSRIVGTYGYMAPEYAMHGQFSAKSDVFSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKPLNIVDPSLNNNSRNEMLRCIHIGLLCVQENLVDKTNMATIILMLNRHSLSLHIPTEPAFYMNSRTRSFPGMQSWEYNSREMGSSEPILKSAQESENEASITELYPR 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3915g00001 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Vium3915g00001 685 Pfam Salt stress response/antifungal 45 140 IPR002902 -
Vium3915g00001 685 Pfam Salt stress response/antifungal 159 254 IPR002902 -
Vium3915g00001 685 FunFam Cysteine-rich receptor-like protein kinase 17 319 428 - -
Vium3915g00001 685 Pfam Protein tyrosine and serine/threonine kinase 356 554 IPR001245 GO:0004672|GO:0006468
Vium3915g00001 685 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Vium3915g00001 685 SMART serkin_6 353 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00001 685 ProSiteProfiles Gnk2-homologous domain profile. 40 143 IPR002902 -
Vium3915g00001 685 FunFam cysteine-rich receptor-like protein kinase 10 429 630 - -
Vium3915g00001 685 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 38 143 - -
Vium3915g00001 685 MobiDBLite consensus disorder prediction 664 678 - -
Vium3915g00001 685 CDD STKc_IRAK 359 625 - -
Vium3915g00001 685 SUPERFAMILY Protein kinase-like (PK-like) 341 652 IPR011009 -
Vium3915g00001 685 FunFam Cysteine-rich receptor-like protein kinase 10 151 256 - -
Vium3915g00001 685 MobiDBLite consensus disorder prediction 664 685 - -
Vium3915g00001 685 ProSiteProfiles Protein kinase domain profile. 353 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3915g00001 685 Gene3D Transferase(Phosphotransferase) domain 1 429 632 - -
Vium3915g00001 685 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 681 - -
Vium3915g00001 685 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Vium3915g00001 685 Gene3D - 38 142 IPR038408 -
Vium3915g00001 685 Gene3D - 150 256 IPR038408 -
Vium3915g00001 685 Gene3D Phosphorylase Kinase; domain 1 316 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3915g00001 Vium-Chr3915 904 8720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3915g00001 27 685 Receptor kinase-like Gene Family AT4G38830 48.054 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3915g00001 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3915g00001 - - vra:106771832 1140.18