Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00013 ATGCCGACGACAAGGTCCCCGAGCCCTTCTTCTGAGGACATCGTCGATTCGACGCCGCTTCTGGCCAATTCTGGCGGCTCCTCAGAGGAGCTCACCACCGGCCGTCGATTTGCTCGCCGGCAGAGGCTACGGCAGGCGGCGAGGTTCCTCCGGCAGGCGAGCGGGCGCAGAATGATGCGCGAGCCGTCGATGCTGGTCCGCGAGGCGGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTTGTTCTGGACATCGTTTGGAACTTCGCGTTCGTGGTTGTGGCGGGGGTCGTGTTGGTTTTGAGCGCGAGAGAAGCGCCGGGGATGCCTCTGAGGTTGTGGATTTTAGGGTACGCTATGCAATGCGTTCTTCACATGGTTTGTGTTTGCGTAGAGTATAGGAGGAGGAGGAGGAACCAACGCGACACCGCGTCGGTTTCAGCGCAGGACAGAGTTGGGAGCAGCAGTGAAAATTTGAGTTCATCTTCGAGGGAGGGTTCTGCTTCTGGCTCTGCGCAGTATGTGTCGTTGGGGCAACTCGATGAGGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCCGGTGGTCAAGAATTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGCATAATTTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCTGTTTGCTGTTGCCTACCATGTATCATTGCACTTCTATACGCAGTTGCAGACCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTTCGGAGAATTCAAAGCAATGAGAAACTTACCGGAACTATACAGGGACCTGTTGGAGGAATAATGACTGAATGCCACCCTGAGTCACGTATGGAACATGTTCTTGCCGAGGAGGATGCGGAATGTTGCATCTGCCTTTCCTCTTATGACGATGGGGTTGAGTTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCCACTTGCCCTCTCTGCAAGTATAACATCTTAAAAAGCAGCAACCTCAGTCAAGAGGAGGTGTAG 1170 0.5103 MPTTRSPSPSSEDIVDSTPLLANSGGSSEELTTGRRFARRQRLRQAARFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGVVLVLSAREAPGMPLRLWILGYAMQCVLHMVCVCVEYRRRRRNQRDTASVSAQDRVGSSSENLSSSSREGSASGSAQYVSLGQLDEEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQELAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIQSNEKLTGTIQGPVGGIMTECHPESRMEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSSNLSQEEV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00013 389 MobiDBLite consensus disorder prediction 1 31 - -
Vium3914g00013 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 388 IPR013083 -
Vium3914g00013 389 SMART ring_2 334 374 IPR001841 -
Vium3914g00013 389 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Vium3914g00013 389 MobiDBLite consensus disorder prediction 1 34 - -
Vium3914g00013 389 FunFam E3 ubiquitin-protein ligase At1g12760 320 385 - -
Vium3914g00013 389 SUPERFAMILY RING/U-box 318 381 - -
Vium3914g00013 389 PANTHER TARGET OF ERK KINASE MPK-1 53 380 - -
Vium3914g00013 389 MobiDBLite consensus disorder prediction 149 175 - -
Vium3914g00013 389 MobiDBLite consensus disorder prediction 152 175 - -
Vium3914g00013 389 Pfam Ring finger domain 333 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00013 Vium-Chr3914 54581 60859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00013 8 382 C3H Transcription Factor Family AT1G68070 48.942 2.12e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00013 - - gmx:100790497 641.728