Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00012 ATGGGTAAGGCATCCAAATGGTTTCGCGCCATTCTTGCTCTCAAAAGACCAGACTCGCCGTCCGCCACCGCTCCCAAACCGCCCAAGGACAAACGACGGTGGAGCTTCGTCAAATCCTACAGAGAAAAGGACCATTCCACCGTCGACCACTCCTCGGTACACGCGGAAAGCGCTGATCCCAACCTTCCAGCACTCACCGCCGTCACCGTCCTCGGAGGCGTTACTCGAGAAGAATGGGCAGCCGTTAAGATTCAAGCCGCGTTTCGAGGCTCTTTGGCAAGGAAAGCCCTTAGAGCGTTAAAAGGATTGGTGAAGCTACAGGCATTAGTGAGAGGTGAGATAGAAAGAAAGCGAACGTCAGAATGGCTGCAAAGAGTACAAACACTCTTACGCATCCAGGCCCAGGCCCAGGCCCAGGCCCAGTTCCGTGTTGGGCGGGCCCAAACTTTTCATTCCCCTTATTTGAATGCAAACTCATCCACTGCCCACCTACATGGTTCACCAGACAAATCTGAAAGCCCCATCAGCTCCGAGAGCATGAAATATGATCACTCACCTTCATTACTCAAGAGAAACAGCTCAAAGTCCCGCATGCATATCAATGTTAACGAAGACAGATCATGGCATGAACGAAGATGGTGGTCAAGAGCTTGTAGCCTGGACGAAGAAGGATGTGTCAGGATTCTAGAAAATGATTCTGTAAAAGCACACGTGCCATCAAAGGGTAGAAGCCATGGTTTGGTTAGTGAAGTTCAGTCTTACAGCCCTCGAAAATGGAACGAGGTTGAGGACAACTCATCGTGTGGTGCTGACAATAGTCCTCGTACTTTGTCCTCTTCTTCTAAAAATGGTGGCTCCAAAAGAAGCCCTTTTACTCCTACCAAGAGCCATCTGAGTGGTTGTTCTGAACCTGATTATCCGAGTTACATGGCATACACTGAATCATCGATGGCAAAGGTAAGATCTGTGAGTGCTCCAAAGCAGAGGCCCACCCAATACCAGAGGTCAAGTTCATCTTCTAACAGCTACTCGCTTCATGATAATGGATTTCAATTTGGTGACTCAAAGTTGGCCACTCAAAGGGTAGCATCATCATCACACGCAAACTTCACTAACAAGGCTTACCCTGCTTCTGGTCGTTTGGACAAGCCTGGGTTATCTGTGCCGTATTATAAATACTGA 1182 0.4873 MGKASKWFRAILALKRPDSPSATAPKPPKDKRRWSFVKSYREKDHSTVDHSSVHAESADPNLPALTAVTVLGGVTREEWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGEIERKRTSEWLQRVQTLLRIQAQAQAQAQFRVGRAQTFHSPYLNANSSTAHLHGSPDKSESPISSESMKYDHSPSLLKRNSSKSRMHINVNEDRSWHERRWWSRACSLDEEGCVRILENDSVKAHVPSKGRSHGLVSEVQSYSPRKWNEVEDNSSCGADNSPRTLSSSSKNGGSKRSPFTPTKSHLSGCSEPDYPSYMAYTESSMAKVRSVSAPKQRPTQYQRSSSSSNSYSLHDNGFQFGDSKLATQRVASSSHANFTNKAYPASGRLDKPGLSVPYYKY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00012 393 PANTHER IQ-DOMAIN 5-RELATED 1 346 - -
Vium3914g00012 393 ProSiteProfiles IQ motif profile. 77 105 IPR000048 GO:0005515
Vium3914g00012 393 Pfam Protein of unknown function (DUF4005) 273 362 IPR025064 -
Vium3914g00012 393 ProSiteProfiles IQ motif profile. 101 128 IPR000048 GO:0005515
Vium3914g00012 393 SMART iq_5 76 98 IPR000048 GO:0005515
Vium3914g00012 393 MobiDBLite consensus disorder prediction 156 183 - -
Vium3914g00012 393 MobiDBLite consensus disorder prediction 320 345 - -
Vium3914g00012 393 MobiDBLite consensus disorder prediction 258 302 - -
Vium3914g00012 393 Gene3D - 75 127 - -
Vium3914g00012 393 MobiDBLite consensus disorder prediction 156 196 - -
Vium3914g00012 393 MobiDBLite consensus disorder prediction 258 301 - -
Vium3914g00012 393 Pfam IQ calmodulin-binding motif 79 98 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00012 Vium-Chr3914 47501 50139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00012 1 49 IQD Protein Family AT4G23060 44.643 2.92e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00012 - - vra:106777320 586.645