Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00011 ATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGAGGCAACGACTGTGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGTGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCCAACTCTGTTTCAGAGTGTGAAATCCGTTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACCGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATATACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAAAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTAGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTATCTCGGTTGAAGGATACAACTTTATTGAATACGAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCCAATGAGAAGTCTGATGTATTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGACAGACGACTAGACCTTCCAGAGGACCTTGATCCCCATGTTGCCTCCATCATCGATGATTGCTGGCAAAGTGATCCAGAGCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACGTTGTTCCTTGTTAACAGAGTAACAGCAGTGTCAATTAGGAGAATTGCAGAATCCTAA 1194 0.4146 MKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSEATTVVTGDEVQKQQEVSQLPSSRESTGSHESLSGKGDYESNSVSECEIRWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSPERLAIVTELLPRGSLFKNIHRNNQTLDIRRRLRVALDVAKGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDTTLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDLPEDLDPHVASIIDDCWQSDPERRPSFEELIQRTLFLVNRVTAVSIRRIAES 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00011 397 MobiDBLite consensus disorder prediction 1 20 - -
Vium3914g00011 397 SUPERFAMILY Protein kinase-like (PK-like) 114 386 IPR011009 -
Vium3914g00011 397 FunFam PAS domain-containing protein tyrosine kinase family protein 205 393 - -
Vium3914g00011 397 Pfam Protein tyrosine and serine/threonine kinase 127 377 IPR001245 GO:0004672|GO:0006468
Vium3914g00011 397 ProSitePatterns Protein kinases ATP-binding region signature. 133 154 IPR017441 GO:0005524
Vium3914g00011 397 MobiDBLite consensus disorder prediction 72 114 - -
Vium3914g00011 397 FunFam Serine/threonine-protein kinase isoform 1 118 205 - -
Vium3914g00011 397 MobiDBLite consensus disorder prediction 1 26 - -
Vium3914g00011 397 Gene3D Transferase(Phosphotransferase) domain 1 206 387 - -
Vium3914g00011 397 PRINTS Tyrosine kinase catalytic domain signature 350 372 IPR001245 GO:0004672|GO:0006468
Vium3914g00011 397 PRINTS Tyrosine kinase catalytic domain signature 240 258 IPR001245 GO:0004672|GO:0006468
Vium3914g00011 397 PRINTS Tyrosine kinase catalytic domain signature 287 297 IPR001245 GO:0004672|GO:0006468
Vium3914g00011 397 PRINTS Tyrosine kinase catalytic domain signature 306 328 IPR001245 GO:0004672|GO:0006468
Vium3914g00011 397 PRINTS Tyrosine kinase catalytic domain signature 201 214 IPR001245 GO:0004672|GO:0006468
Vium3914g00011 397 Gene3D Phosphorylase Kinase; domain 1 120 204 - -
Vium3914g00011 397 ProSiteProfiles Protein kinase domain profile. 127 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00011 397 SMART serkin_6 127 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00011 397 CDD STKc_MAP3K-like 133 378 - -
Vium3914g00011 397 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 60 380 - -
Vium3914g00011 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00011 Vium-Chr3914 42523 46548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00011 118 385 MAP Kinase Kinase Kinase AT4G23050 72.761 3.21e-145 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium3914g00011 PK_Tyr_Ser-Thr 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00011 - - vum:124836158 773.467