Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3914g00010 ATGATCCTCTCTATGGTTCGATCACTTCAGGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAATATGAAAAATAATTGTGCAGATGATAATTCGGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACTAAATCTTCAGAAATGTAATTCTTCACTTGCAATGAAGAGAGCGGAAACAACCGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGAGGCAACGACTGTGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGTGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCACGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCCAACTCTGTTTCAGAGTGTGAAATCCGTTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACCGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATATACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAAAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTAGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTATCTCGGTTGAAGGATACAACTTTATTGAATACGAAATCTGGGAGAGGCACCGTAATGACGTCACTCGGTTTTTTCATTTTTAAATATGAAACTGCTGATCTGAGCAGCTGGCAACTCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCCAATGAGAAGTCTGATGTATTCAGTTTTGGTGTCATCCTCTGGGAACTAA 1104 0.4076 MILSMVRSLQAAKLQTGVRAKYGKDNGNMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKELNLQKCNSSLAMKRAETTACASRASTVSKDYSEATTVVTGDEVQKQQEVSQLPSSRESTGSHESLSGKGDYESNSVSECEIRWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSPERLAIVTELLPRGSLFKNIHRNNQTLDIRRRLRVALDVAKGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDTTLLNTKSGRGTVMTSLGFFIFKYETADLSSWQLLNGWPLKSLEMNLPMRSLMYSVLVSSSGN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3914g00010 367 ProSiteProfiles Protein kinase domain profile. 155 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00010 367 ProSitePatterns Protein kinases ATP-binding region signature. 161 182 IPR017441 GO:0005524
Vium3914g00010 367 SMART serkin_6 155 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3914g00010 367 Gene3D Phosphorylase Kinase; domain 1 148 232 - -
Vium3914g00010 367 Gene3D Transferase(Phosphotransferase) domain 1 233 323 - -
Vium3914g00010 367 MobiDBLite consensus disorder prediction 107 142 - -
Vium3914g00010 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Vium3914g00010 367 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 317 - -
Vium3914g00010 367 Pfam Protein tyrosine and serine/threonine kinase 155 306 IPR001245 GO:0004672|GO:0006468
Vium3914g00010 367 FunFam Serine/threonine-protein kinase isoform 1 146 233 - -
Vium3914g00010 367 SUPERFAMILY Protein kinase-like (PK-like) 136 316 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3914g00010 Vium-Chr3914 42406 46126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3914g00010 146 316 MAP Kinase Kinase Kinase AT4G23050 71.345 1.41e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium3914g00010 PK_Tyr_Ser-Thr 5.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3914g00010 - - vum:124836158 597.045